Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 AC046158.3-201ENST00000624947 2558 ntBASIC13.76□□□□□ -0.21
CKS1BP61024 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CKS1BP61024 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC13.76□□□□□ -0.21
CKS1BP61024 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CKS1BP61024 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CKS1BP61024 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC13.76□□□□□ -0.21
CKS1BP61024 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC13.76□□□□□ -0.21
CKS1BP61024 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CKS1BP61024 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
CKS1BP61024 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC13.76□□□□□ -0.21
CKS1BP61024 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CKS1BP61024 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC13.76□□□□□ -0.21
CKS1BP61024 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC13.75□□□□□ -0.21
CKS1BP61024 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC13.75□□□□□ -0.21
CKS1BP61024 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
CKS1BP61024 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
CKS1BP61024 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC13.75□□□□□ -0.21
CKS1BP61024 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 AC139713.2-201ENST00000641328 2723 ntBASIC13.75□□□□□ -0.21
CKS1BP61024 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC13.75□□□□□ -0.21
CKS1BP61024 LHPP-203ENST00000392757 840 ntTSL 3 BASIC13.75□□□□□ -0.21
CKS1BP61024 IGHV3-19-201ENST00000521488 291 ntBASIC13.75□□□□□ -0.21
CKS1BP61024 MIR4767-201ENST00000582827 78 ntBASIC13.75□□□□□ -0.21
CKS1BP61024 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 AC105233.4-201ENST00000642045 216 ntBASIC13.75□□□□□ -0.21
CKS1BP61024 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CKS1BP61024 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC13.75□□□□□ -0.21
CKS1BP61024 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 AC068418.2-201ENST00000577309 3703 ntBASIC13.75□□□□□ -0.21
CKS1BP61024 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CKS1BP61024 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CKS1BP61024 ME2-218ENST00000640965 2476 ntTSL 5 BASIC13.74□□□□□ -0.21
CKS1BP61024 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CKS1BP61024 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC13.74□□□□□ -0.21
CKS1BP61024 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 BID-203ENST00000399765 1879 ntTSL 2 BASIC13.74□□□□□ -0.21
CKS1BP61024 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CKS1BP61024 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC13.74□□□□□ -0.21
CKS1BP61024 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
CKS1BP61024 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC13.74□□□□□ -0.21
CKS1BP61024 AL136116.3-201ENST00000402907 1138 ntBASIC13.74□□□□□ -0.21
CKS1BP61024 AC131281.2-201ENST00000520478 145 ntBASIC13.74□□□□□ -0.21
CKS1BP61024 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC13.74□□□□□ -0.21
CKS1BP61024 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CKS1BP61024 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CKS1BP61024 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CKS1BP61024 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CKS1BP61024 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC13.74□□□□□ -0.21
CKS1BP61024 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CKS1BP61024 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CKS1BP61024 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC13.74□□□□□ -0.21
CKS1BP61024 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CKS1BP61024 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CKS1BP61024 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC13.73□□□□□ -0.21
CKS1BP61024 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CKS1BP61024 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CKS1BP61024 AC055733.4-201ENST00000638462 1354 ntBASIC13.73□□□□□ -0.21
CKS1BP61024 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CKS1BP61024 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CKS1BP61024 AC005224.4-201ENST00000583262 1652 ntBASIC13.73□□□□□ -0.21
CKS1BP61024 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CKS1BP61024 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms