Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.2■□□□□ 0.82
CDH4P55283 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CDH4P55283 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CDH4P55283 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CDH4P55283 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.2■□□□□ 0.82
CDH4P55283 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.2■□□□□ 0.82
CDH4P55283 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.2■□□□□ 0.82
CDH4P55283 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDH4P55283 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDH4P55283 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDH4P55283 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDH4P55283 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.2■□□□□ 0.82
CDH4P55283 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.2■□□□□ 0.82
CDH4P55283 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDH4P55283 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CDH4P55283 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
CDH4P55283 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.19■□□□□ 0.82
CDH4P55283 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH4P55283 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CDH4P55283 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.19■□□□□ 0.82
CDH4P55283 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.19■□□□□ 0.82
CDH4P55283 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDH4P55283 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH4P55283 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH4P55283 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.19■□□□□ 0.82
CDH4P55283 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CDH4P55283 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH4P55283 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDH4P55283 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CDH4P55283 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.18■□□□□ 0.82
CDH4P55283 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CDH4P55283 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH4P55283 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH4P55283 KRT18P16-201ENST00000510337 1294 ntBASIC20.18■□□□□ 0.82
CDH4P55283 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.18■□□□□ 0.82
CDH4P55283 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH4P55283 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CDH4P55283 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CDH4P55283 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CDH4P55283 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH4P55283 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH4P55283 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 TMEM179-206ENST00000616017 1645 ntBASIC20.17■□□□□ 0.82
CDH4P55283 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.17■□□□□ 0.82
CDH4P55283 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CDH4P55283 MIR718-201ENST00000390190 70 ntBASIC20.17■□□□□ 0.82
CDH4P55283 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CDH4P55283 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 AC093827.2-201ENST00000512654 315 ntBASIC20.17■□□□□ 0.82
CDH4P55283 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.17■□□□□ 0.82
CDH4P55283 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.17■□□□□ 0.82
CDH4P55283 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 AL135905.2-201ENST00000584934 1404 ntBASIC20.17■□□□□ 0.82
CDH4P55283 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH4P55283 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CDH4P55283 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
CDH4P55283 AC112907.3-201ENST00000577781 2400 ntBASIC20.16■□□□□ 0.82
CDH4P55283 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CDH4P55283 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDH4P55283 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CDH4P55283 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CDH4P55283 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms