Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SOX3P41225 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX3P41225 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
SOX3P41225 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX3P41225 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.53■□□□□ 0.56
SOX3P41225 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX3P41225 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.53■□□□□ 0.56
SOX3P41225 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX3P41225 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.52■□□□□ 0.56
SOX3P41225 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX3P41225 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX3P41225 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SOX3P41225 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX3P41225 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX3P41225 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX3P41225 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.52■□□□□ 0.56
SOX3P41225 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX3P41225 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SOX3P41225 KRT17P3-201ENST00000420566 1262 ntBASIC18.52■□□□□ 0.56
SOX3P41225 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.52■□□□□ 0.56
SOX3P41225 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.52■□□□□ 0.56
SOX3P41225 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.52■□□□□ 0.56
SOX3P41225 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.52■□□□□ 0.56
SOX3P41225 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.52■□□□□ 0.56
SOX3P41225 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.52■□□□□ 0.56
SOX3P41225 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX3P41225 SMG8-203ENST00000578922 2178 ntBASIC18.52■□□□□ 0.56
SOX3P41225 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
SOX3P41225 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
SOX3P41225 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
SOX3P41225 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SOX3P41225 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.51■□□□□ 0.55
SOX3P41225 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.51■□□□□ 0.55
SOX3P41225 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 POM121L13P-201ENST00000422362 380 ntBASIC18.51■□□□□ 0.55
SOX3P41225 AC023632.3-201ENST00000521633 145 ntBASIC18.51■□□□□ 0.55
SOX3P41225 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.51■□□□□ 0.55
SOX3P41225 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.51■□□□□ 0.55
SOX3P41225 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX3P41225 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.51■□□□□ 0.55
SOX3P41225 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.51■□□□□ 0.55
SOX3P41225 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
SOX3P41225 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.51■□□□□ 0.55
SOX3P41225 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.5■□□□□ 0.55
SOX3P41225 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX3P41225 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SOX3P41225 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.5■□□□□ 0.55
SOX3P41225 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX3P41225 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX3P41225 AC098590.1-201ENST00000468126 897 ntBASIC18.5■□□□□ 0.55
SOX3P41225 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
SOX3P41225 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SOX3P41225 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.5■□□□□ 0.55
SOX3P41225 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.5■□□□□ 0.55
SOX3P41225 AC233263.1-201ENST00000578059 224 ntBASIC18.5■□□□□ 0.55
SOX3P41225 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.5■□□□□ 0.55
SOX3P41225 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX3P41225 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX3P41225 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX3P41225 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.5■□□□□ 0.55
SOX3P41225 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.5■□□□□ 0.55
SOX3P41225 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX3P41225 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX3P41225 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SOX3P41225 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.5■□□□□ 0.55
SOX3P41225 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SOX3P41225 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.49■□□□□ 0.55
SOX3P41225 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SOX3P41225 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SOX3P41225 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.49■□□□□ 0.55
SOX3P41225 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 AC069544.1-201ENST00000609399 999 ntBASIC18.49■□□□□ 0.55
SOX3P41225 AC120498.8-201ENST00000614275 531 ntBASIC18.49■□□□□ 0.55
SOX3P41225 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SOX3P41225 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.49■□□□□ 0.55
SOX3P41225 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 AC092720.2-201ENST00000602388 1665 ntBASIC18.49■□□□□ 0.55
SOX3P41225 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
SOX3P41225 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.49■□□□□ 0.55
SOX3P41225 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms