Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
MSX2P35548 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.78■□□□□ 0.6
MSX2P35548 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
MSX2P35548 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.78■□□□□ 0.6
MSX2P35548 MIR939-201ENST00000401314 82 ntBASIC18.78■□□□□ 0.6
MSX2P35548 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.78■□□□□ 0.6
MSX2P35548 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.78■□□□□ 0.6
MSX2P35548 AP001160.3-201ENST00000601484 763 ntBASIC18.78■□□□□ 0.6
MSX2P35548 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
MSX2P35548 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.78■□□□□ 0.6
MSX2P35548 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.78■□□□□ 0.6
MSX2P35548 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
MSX2P35548 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
MSX2P35548 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
MSX2P35548 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
MSX2P35548 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX2P35548 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX2P35548 RBM17P2-201ENST00000616397 1405 ntBASIC18.77■□□□□ 0.6
MSX2P35548 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX2P35548 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.77■□□□□ 0.6
MSX2P35548 AL133373.2-201ENST00000623187 2828 ntBASIC18.77■□□□□ 0.6
MSX2P35548 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX2P35548 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.77■□□□□ 0.6
MSX2P35548 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MSX2P35548 DUX4L2-201ENST00000561772 1275 ntBASIC18.77■□□□□ 0.6
MSX2P35548 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.77■□□□□ 0.6
MSX2P35548 DUX4L6-201ENST00000626483 1275 ntBASIC18.77■□□□□ 0.6
MSX2P35548 DUX4L1-201ENST00000627662 1275 ntBASIC18.77■□□□□ 0.6
MSX2P35548 DUX4L8-201ENST00000629013 1275 ntBASIC18.77■□□□□ 0.6
MSX2P35548 DUX4L3-201ENST00000630187 1275 ntBASIC18.77■□□□□ 0.6
MSX2P35548 DUX4L7-201ENST00000630678 1275 ntBASIC18.77■□□□□ 0.6
MSX2P35548 DUX4L5-201ENST00000630834 1275 ntBASIC18.77■□□□□ 0.6
MSX2P35548 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MSX2P35548 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX2P35548 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX2P35548 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
MSX2P35548 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.77■□□□□ 0.6
MSX2P35548 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.77■□□□□ 0.6
MSX2P35548 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX2P35548 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.77■□□□□ 0.6
MSX2P35548 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.77■□□□□ 0.6
MSX2P35548 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.77■□□□□ 0.6
MSX2P35548 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
MSX2P35548 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.59
MSX2P35548 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
MSX2P35548 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.59
MSX2P35548 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.77■□□□□ 0.59
MSX2P35548 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.77■□□□□ 0.59
MSX2P35548 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
MSX2P35548 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
MSX2P35548 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
MSX2P35548 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
MSX2P35548 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
MSX2P35548 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
MSX2P35548 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
MSX2P35548 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
MSX2P35548 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
MSX2P35548 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.76■□□□□ 0.59
MSX2P35548 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 IRS3P-201ENST00000223076 1006 ntBASIC18.76■□□□□ 0.59
MSX2P35548 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 AC105265.2-201ENST00000467189 838 ntBASIC18.76■□□□□ 0.59
MSX2P35548 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.76■□□□□ 0.59
MSX2P35548 AC106739.1-201ENST00000617035 715 ntBASIC18.76■□□□□ 0.59
MSX2P35548 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.76■□□□□ 0.59
MSX2P35548 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.76■□□□□ 0.59
MSX2P35548 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.76■□□□□ 0.59
MSX2P35548 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.76■□□□□ 0.59
MSX2P35548 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
MSX2P35548 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
MSX2P35548 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MSX2P35548 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.75■□□□□ 0.59
MSX2P35548 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.75■□□□□ 0.59
MSX2P35548 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
MSX2P35548 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX2P35548 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms