Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM13O60858 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM13O60858 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM13O60858 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.69
TRIM13O60858 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 PHGDH-210ENST00000641115 1638 ntBASIC19.39■□□□□ 0.69
TRIM13O60858 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TRIM13O60858 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM13O60858 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM13O60858 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM13O60858 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.38■□□□□ 0.69
TRIM13O60858 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TRIM13O60858 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TRIM13O60858 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
TRIM13O60858 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM13O60858 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM13O60858 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM13O60858 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TRIM13O60858 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM13O60858 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM13O60858 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM13O60858 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM13O60858 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM13O60858 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM13O60858 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM13O60858 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM13O60858 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
TRIM13O60858 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM13O60858 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM13O60858 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM13O60858 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM13O60858 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM13O60858 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.37■□□□□ 0.69
TRIM13O60858 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM13O60858 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM13O60858 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM13O60858 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM13O60858 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
TRIM13O60858 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM13O60858 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM13O60858 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM13O60858 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM13O60858 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM13O60858 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM13O60858 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM13O60858 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
TRIM13O60858 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM13O60858 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM13O60858 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM13O60858 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.36■□□□□ 0.69
TRIM13O60858 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
TRIM13O60858 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
TRIM13O60858 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.36■□□□□ 0.69
TRIM13O60858 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM13O60858 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
TRIM13O60858 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM13O60858 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM13O60858 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM13O60858 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM13O60858 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM13O60858 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
TRIM13O60858 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 AC068338.2-201ENST00000563278 1430 ntBASIC19.35■□□□□ 0.69
TRIM13O60858 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRIM13O60858 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
TRIM13O60858 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM13O60858 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
TRIM13O60858 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
TRIM13O60858 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM13O60858 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
TRIM13O60858 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms