Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC3.99□□□□□ -1.77
PRKDCP78527 MGAT2P1-201ENST00000449718 797 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 COX6B1P5-201ENST00000509843 249 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 EIF3KP3-201ENST00000514461 639 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 AC112243.1-201ENST00000623949 3851 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 AOX3P-204ENST00000491025 2107 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 LAMA3-203ENST00000399516 9834 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 AL080317.3-201ENST00000607434 4315 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
PRKDCP78527 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
PRKDCP78527 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
PRKDCP78527 AC019205.1-201ENST00000421830 730 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 AC006946.1-201ENST00000429106 328 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC3.99□□□□□ -1.77
PRKDCP78527 RPS3AP38-201ENST00000435889 763 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 AC097484.1-201ENST00000471148 389 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.99□□□□□ -1.77
PRKDCP78527 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.99□□□□□ -1.77
PRKDCP78527 AC006130.2-201ENST00000586202 326 ntBASIC3.99□□□□□ -1.77
PRKDCP78527 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
PRKDCP78527 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC3.99□□□□□ -1.77
PRKDCP78527 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 OPA3-201ENST00000263275 7828 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC3.99□□□□□ -1.77
PRKDCP78527 DLG1-201ENST00000346964 5034 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
PRKDCP78527 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PRKDCP78527 REV3L-201ENST00000358835 10815 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
PRKDCP78527 TBC1D15-217ENST00000550746 6184 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 WSB1-201ENST00000262394 5139 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 PDE11A-201ENST00000286063 9275 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 AC009480.2-201ENST00000422916 432 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 AC007559.1-201ENST00000428736 355 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 SNORA59A-201ENST00000459326 152 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC3.98□□□□□ -1.77
PRKDCP78527 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC3.98□□□□□ -1.77
PRKDCP78527 AP000889.1-201ENST00000530968 660 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.98□□□□□ -1.77
PRKDCP78527 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
PRKDCP78527 MFSD8-239ENST00000641590 2479 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC3.98□□□□□ -1.77
PRKDCP78527 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
PRKDCP78527 MTHFD1-202ENST00000545908 6814 ntTSL 2 BASIC3.98□□□□□ -1.77
PRKDCP78527 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC3.98□□□□□ -1.77
PRKDCP78527 RNU1-146P-201ENST00000364015 165 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 NPM1P33-201ENST00000438918 872 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 AC104634.1-201ENST00000452720 462 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC3.98□□□□□ -1.77
PRKDCP78527 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC3.98□□□□□ -1.77
PRKDCP78527 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 CD34-201ENST00000310833 8246 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 SEMA6D-206ENST00000389428 5874 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 CALN1-202ENST00000395275 9459 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
PRKDCP78527 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC3.98□□□□□ -1.77
PRKDCP78527 GCN1-201ENST00000300648 8675 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 SNHG14-208ENST00000453082 6087 ntTSL 5 BASIC3.98□□□□□ -1.77
PRKDCP78527 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC3.98□□□□□ -1.77
PRKDCP78527 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
PRKDCP78527 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC3.98□□□□□ -1.77
PRKDCP78527 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 RGS6-201ENST00000343854 5342 ntTSL 5 BASIC3.98□□□□□ -1.77
PRKDCP78527 GIT2-203ENST00000355312 5466 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
PRKDCP78527 RNU1-85P-201ENST00000364127 164 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
PRKDCP78527 NUDT19P3-201ENST00000404698 555 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 AL139039.2-201ENST00000407436 479 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 LDHAP2-201ENST00000437325 985 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.98□□□□□ -1.77
PRKDCP78527 IGKV2D-10-201ENST00000520194 281 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC3.98□□□□□ -1.77
PRKDCP78527 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC3.98□□□□□ -1.77
PRKDCP78527 AL021368.3-201ENST00000607119 578 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 CTDSPL2-201ENST00000260327 6828 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 ANKRD17-202ENST00000358602 10784 ntAPPRIS P4 TSL 5 BASIC3.98□□□□□ -1.77
PRKDCP78527 FRY-202ENST00000380250 10688 ntTSL 5 BASIC3.98□□□□□ -1.77
PRKDCP78527 FRY-209ENST00000642040 10697 ntBASIC3.98□□□□□ -1.77
PRKDCP78527 MAP7D3-204ENST00000370663 4446 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
PRKDCP78527 PRPF8-201ENST00000304992 7295 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms