RNA–Protein interactions for RNA: ENST00000399516.7

LAMA3-203, Transcript of laminin subunit alpha 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LAMA3, Length 9,834 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA3-203ENST00000399516 DCAF8L2P0C7V8 631 aa18.82■□□□□ 0.6
LAMA3-203ENST00000399516 SUPT5HO00267 1087 aaKnown RBP18.23■□□□□ 0.51
LAMA3-203ENST00000399516 PELP1Q8IZL8 1130 aaKnown RBP18.1■□□□□ 0.49
LAMA3-203ENST00000399516 NISCHQ9Y2I1 1504 aa18.05■□□□□ 0.48
LAMA3-203ENST00000399516 SHROOM4Q9ULL8 1493 aa17.89■□□□□ 0.45
LAMA3-203ENST00000399516 EHMT2Q96KQ7 1210 aa17.72■□□□□ 0.43
LAMA3-203ENST00000399516 APLP2Q06481 763 aa17.48■□□□□ 0.39
LAMA3-203ENST00000399516 PCGF6Q9BYE7 350 aa17.43■□□□□ 0.38
LAMA3-203ENST00000399516 CENPBP07199 599 aaPredicted RBP17.37■□□□□ 0.37
LAMA3-203ENST00000399516 ERICH6Q7L0X2 663 aa17.31■□□□□ 0.36
LAMA3-203ENST00000399516 ZEB1P37275 1124 aaPredicted RBP17.26■□□□□ 0.35
LAMA3-203ENST00000399516 TTBK1Q5TCY1 1321 aaPredicted RBP17.25■□□□□ 0.35
LAMA3-203ENST00000399516 MYT1Q01538 1121 aa17.22■□□□□ 0.35
LAMA3-203ENST00000399516 CCER1Q8TC90 406 aaPredicted RBP17.21■□□□□ 0.35
LAMA3-203ENST00000399516 FAM9AQ8IZU1 332 aaPredicted RBP17.2■□□□□ 0.34
LAMA3-203ENST00000399516 NEFLP07196 543 aa16.95■□□□□ 0.3
LAMA3-203ENST00000399516 YTHDC1Q96MU7 727 aaKnown RBP16.94■□□□□ 0.3
LAMA3-203ENST00000399516 TRIM41Q8WV44 630 aa16.88■□□□□ 0.29
LAMA3-203ENST00000399516 RANGAP1P46060 587 aaPredicted RBP16.87■□□□□ 0.29
LAMA3-203ENST00000399516 UBTFP17480 764 aaKnown RBP16.69■□□□□ 0.26
LAMA3-203ENST00000399516 ATP1B4Q9UN42 357 aaPredicted RBP16.65■□□□□ 0.26
LAMA3-203ENST00000399516 HRCP23327 699 aa16.63■□□□□ 0.25
LAMA3-203ENST00000399516 TRIM26Q12899 539 aaPredicted RBP16.62■□□□□ 0.25
LAMA3-203ENST00000399516 PPARGC1BQ86YN6 1023 aaKnown RBP16.52■□□□□ 0.24
LAMA3-203ENST00000399516 DAXXQ9UER7 740 aaPredicted RBP16.49■□□□□ 0.23
LAMA3-203ENST00000399516 RTL5Q5HYW3 569 aaPredicted RBP16.23■□□□□ 0.19
LAMA3-203ENST00000399516 ITGAEP38570 1179 aa16.22■□□□□ 0.19
LAMA3-203ENST00000399516 POLR3GLQ9BT43 218 aa16.21■□□□□ 0.19
LAMA3-203ENST00000399516 DIEXFQ68CQ4 756 aaKnown RBP16.18■□□□□ 0.18
LAMA3-203ENST00000399516 HNRNPUL2Q1KMD3 747 aaKnown RBP16.17■□□□□ 0.18
LAMA3-203ENST00000399516 LOC105371045A0A1W2PR82 267 aa16.17■□□□□ 0.18
LAMA3-203ENST00000399516 ZNF316A6NFI3 1004 aaPredicted RBP16.16■□□□□ 0.18
LAMA3-203ENST00000399516 CHIC1Q5VXU3 224 aa16.15■□□□□ 0.18
LAMA3-203ENST00000399516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.1■□□□□ 0.17
LAMA3-203ENST00000399516 CNGB1Q14028 1251 aaPredicted RBP16.03■□□□□ 0.16
LAMA3-203ENST00000399516 CLSPNQ9HAW4 1339 aa15.98■□□□□ 0.15
LAMA3-203ENST00000399516 GTF3C3Q9Y5Q9 886 aa15.98■□□□□ 0.15
LAMA3-203ENST00000399516 BCANQ96GW7 911 aa15.93■□□□□ 0.14
LAMA3-203ENST00000399516 MYT1LQ9UL68 1186 aa15.93■□□□□ 0.14
LAMA3-203ENST00000399516 SLC4A1APQ9BWU0 796 aaKnown RBP15.83■□□□□ 0.13
LAMA3-203ENST00000399516 CDK11AQ9UQ88 783 aaPredicted RBP15.82■□□□□ 0.12
LAMA3-203ENST00000399516 FAM50AQ14320 339 aaKnown RBP15.81■□□□□ 0.12
LAMA3-203ENST00000399516 ANP32CO43423 234 aa15.78■□□□□ 0.12
LAMA3-203ENST00000399516 NEUROD1Q13562 356 aa15.75■□□□□ 0.11
LAMA3-203ENST00000399516 ACIN1Q9UKV3 1341 aaKnown RBP15.74■□□□□ 0.11
LAMA3-203ENST00000399516 TRIM52Q96A61 297 aa15.7■□□□□ 0.1
LAMA3-203ENST00000399516 ANP32AP39687 249 aaKnown RBP15.65■□□□□ 0.1
LAMA3-203ENST00000399516 ZNF326Q5BKZ1 582 aaKnown RBP15.62■□□□□ 0.09
LAMA3-203ENST00000399516 CANXP27824 592 aaKnown RBP15.6■□□□□ 0.09
LAMA3-203ENST00000399516 ZBTB47Q9UFB7 747 aaPredicted RBP15.59■□□□□ 0.09
LAMA3-203ENST00000399516 NPM2Q86SE8 214 aaKnown RBP15.48■□□□□ 0.07
LAMA3-203ENST00000399516 DCAF1Q9Y4B6 1507 aa15.46■□□□□ 0.07
LAMA3-203ENST00000399516 EIF5BO60841 1220 aaKnown RBP15.43■□□□□ 0.06
LAMA3-203ENST00000399516 FKBP8Q14318 412 aa15.41■□□□□ 0.06
LAMA3-203ENST00000399516 BCL11AQ9H165 835 aa15.4■□□□□ 0.06
LAMA3-203ENST00000399516 ANP32BQ92688 251 aaKnown RBP15.38■□□□□ 0.05
LAMA3-203ENST00000399516 GLIPR1L2Q4G1C9 344 aa15.34■□□□□ 0.05
LAMA3-203ENST00000399516 NEFMP07197 916 aa15.34■□□□□ 0.05
LAMA3-203ENST00000399516 TONSLQ96HA7 1378 aa15.31■□□□□ 0.04
LAMA3-203ENST00000399516 HSP90AA1P07900 732 aaKnown RBP15.3■□□□□ 0.04
LAMA3-203ENST00000399516 ABCC9O60706 1549 aa15.28■□□□□ 0.04
LAMA3-203ENST00000399516 SLC24A1O60721 1099 aa15.28■□□□□ 0.04
LAMA3-203ENST00000399516 HNRNPUQ00839 825 aaKnown RBP eCLIP15.28■□□□□ 0.04
LAMA3-203ENST00000399516 UPF2Q9HAU5 1272 aaKnown RBP15.28■□□□□ 0.04
LAMA3-203ENST00000399516 NBR1Q14596 966 aa15.27■□□□□ 0.03
LAMA3-203ENST00000399516 SCAF1Q9H7N4 1312 aaKnown RBP15.26■□□□□ 0.03
LAMA3-203ENST00000399516 PABPN1Q86U42 306 aaKnown RBP eCLIP15.24■□□□□ 0.03
LAMA3-203ENST00000399516 CSRNP3Q8WYN3 585 aa15.22■□□□□ 0.03
LAMA3-203ENST00000399516 ARID3CA6NKF2 412 aa15.19■□□□□ 0.02
LAMA3-203ENST00000399516 P3H3Q8IVL6 736 aa15.19■□□□□ 0.02
LAMA3-203ENST00000399516 FAM9BQ8IZU0 186 aa15.19■□□□□ 0.02
LAMA3-203ENST00000399516 CCDC136Q96JN2 1154 aa15.18■□□□□ 0.02
LAMA3-203ENST00000399516 SCRIBQ14160 1630 aa15.18■□□□□ 0.02
LAMA3-203ENST00000399516 CCDC180Q9P1Z9 1646 aa15.17■□□□□ 0.02
LAMA3-203ENST00000399516 DDX10Q13206 875 aaKnown RBP15.16■□□□□ 0.02
LAMA3-203ENST00000399516 FBLN2P98095 1184 aa15.14■□□□□ 0.01
LAMA3-203ENST00000399516 ZNF777Q9ULD5 760 aaPredicted RBP15.14■□□□□ 0.01
LAMA3-203ENST00000399516 ARXQ96QS3 562 aa15.11■□□□□ 0.01
LAMA3-203ENST00000399516 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.09■□□□□ 0.01
LAMA3-203ENST00000399516 MIER1Q8N108 512 aa15.07■□□□□ 0
LAMA3-203ENST00000399516 MRS2Q9HD23 443 aa15.05■□□□□ -0
LAMA3-203ENST00000399516 IRX6P78412 446 aaPredicted RBP15.03■□□□□ -0
LAMA3-203ENST00000399516 TMC1Q8TDI8 760 aa15.03■□□□□ -0
LAMA3-203ENST00000399516 SALL2Q9Y467 1007 aaPredicted RBP15.02□□□□□ -0.01
LAMA3-203ENST00000399516 ZCCHC6Q5VYS8 1495 aaKnown RBP15.01□□□□□ -0.01
LAMA3-203ENST00000399516 WDR43Q15061 677 aaKnown RBP eCLIP14.99□□□□□ -0.01
LAMA3-203ENST00000399516 DDRGK1Q96HY6 314 aa14.99□□□□□ -0.01
LAMA3-203ENST00000399516 ANP32EQ9BTT0 268 aa14.98□□□□□ -0.01
LAMA3-203ENST00000399516 MYO15BQ96JP2 1530 aa14.96□□□□□ -0.02
LAMA3-203ENST00000399516 BECN1Q14457 450 aa14.95□□□□□ -0.02
LAMA3-203ENST00000399516 CLIP1P30622 1438 aa14.95□□□□□ -0.02
LAMA3-203ENST00000399516 MYH16Q9H6N6 1097 aa14.93□□□□□ -0.02
LAMA3-203ENST00000399516 CHIC2Q9UKJ5 165 aa14.9□□□□□ -0.02
LAMA3-203ENST00000399516 TRIM44Q96DX7 344 aaPredicted RBP14.88□□□□□ -0.03
LAMA3-203ENST00000399516 CHGAP10645 457 aaKnown RBP14.88□□□□□ -0.03
LAMA3-203ENST00000399516 MTUS2Q5JR59 1369 aa14.86□□□□□ -0.03
LAMA3-203ENST00000399516 STAG3Q9UJ98 1225 aa14.85□□□□□ -0.03
LAMA3-203ENST00000399516 HIRIP3Q9BW71 556 aaPredicted RBP14.85□□□□□ -0.03
LAMA3-203ENST00000399516 CEP162Q5TB80 1403 aa14.84□□□□□ -0.03
LAMA3-203ENST00000399516 GOLGA6L22H0YM25 854 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms