RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 CHIC1Q5VXU3 224 aa20.32■□□□□ 0.84
CPSF7-220ENST00000541963 AEBP2Q6ZN18 517 aaPredicted RBP20.31■□□□□ 0.84
CPSF7-220ENST00000541963 PHF23Q9BUL5 403 aaPredicted RBP17.83■□□□□ 0.44
CPSF7-220ENST00000541963 SENP3Q9H4L4 574 aaPredicted RBP17.33■□□□□ 0.36
CPSF7-220ENST00000541963 PLPPR3Q6T4P5 718 aa16.74■□□□□ 0.27
CPSF7-220ENST00000541963 FOXD1Q16676 465 aa15.95■□□□□ 0.14
CPSF7-220ENST00000541963 ADRA2BP18089 450 aa15.68■□□□□ 0.1
CPSF7-220ENST00000541963 PPP6R1Q9UPN7 881 aa15.61■□□□□ 0.09
CPSF7-220ENST00000541963 PIAS4Q8N2W9 510 aaPredicted RBP15.21■□□□□ 0.03
CPSF7-220ENST00000541963 KCNA4P22459 653 aa14.83□□□□□ -0.04
CPSF7-220ENST00000541963 PPP4R3CPQ6ZMV5 832 aa14.77□□□□□ -0.05
CPSF7-220ENST00000541963 MSH5O43196 834 aa14.65□□□□□ -0.06
CPSF7-220ENST00000541963 NCBP3Q53F19 620 aaKnown RBP14.61□□□□□ -0.07
CPSF7-220ENST00000541963 SCAF1Q9H7N4 1312 aaKnown RBP14.51□□□□□ -0.09
CPSF7-220ENST00000541963 CNKSR2Q8WXI2 1034 aa14.3□□□□□ -0.12
CPSF7-220ENST00000541963 EHMT2Q96KQ7 1210 aa14.3□□□□□ -0.12
CPSF7-220ENST00000541963 SLC4A1APQ9BWU0 796 aaKnown RBP14.28□□□□□ -0.12
CPSF7-220ENST00000541963 NPM3O75607 178 aaKnown RBP14.25□□□□□ -0.13
CPSF7-220ENST00000541963 MAPK8IP2Q13387 824 aaPredicted RBP14.08□□□□□ -0.16
CPSF7-220ENST00000541963 RNF216Q9NWF9 866 aaPredicted RBP13.91□□□□□ -0.18
CPSF7-220ENST00000541963 CSRNP3Q8WYN3 585 aa13.89□□□□□ -0.19
CPSF7-220ENST00000541963 DMRT2Q9Y5R5 561 aa13.85□□□□□ -0.19
CPSF7-220ENST00000541963 DNAJC5BQ9UF47 199 aa13.76□□□□□ -0.21
CPSF7-220ENST00000541963 HOXD11P31277 338 aaPredicted RBP13.7□□□□□ -0.22
CPSF7-220ENST00000541963 FOXD4L1Q9NU39 408 aa13.59□□□□□ -0.23
CPSF7-220ENST00000541963 ZBTB22O15209 634 aa13.57□□□□□ -0.24
CPSF7-220ENST00000541963 DCAF8L1A6NGE4 600 aa13.34□□□□□ -0.27
CPSF7-220ENST00000541963 SLC4A2P04920 1241 aa13.31□□□□□ -0.28
CPSF7-220ENST00000541963 MYCNP04198 464 aaPredicted RBP13.23□□□□□ -0.29
CPSF7-220ENST00000541963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.17□□□□□ -0.32e-8■■□□□ 13
CPSF7-220ENST00000541963 ATXN8OSP0DMR3 200 aa13.11□□□□□ -0.31
CPSF7-220ENST00000541963 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.02□□□□□ -0.33
CPSF7-220ENST00000541963 HNRNPUL2Q1KMD3 747 aaKnown RBP13.02□□□□□ -0.33
CPSF7-220ENST00000541963 SAMD1Q6SPF0 538 aaPredicted RBP12.95□□□□□ -0.34
CPSF7-220ENST00000541963 U3KPZ7 1027 aaPredicted RBP12.88□□□□□ -0.35
CPSF7-220ENST00000541963 APLP2Q06481 763 aa12.84□□□□□ -0.35
CPSF7-220ENST00000541963 NISCHQ9Y2I1 1504 aa12.72□□□□□ -0.37
CPSF7-220ENST00000541963 ATF5Q9Y2D1 282 aaPredicted RBP12.71□□□□□ -0.37
CPSF7-220ENST00000541963 FKBP8Q14318 412 aa12.61□□□□□ -0.39
CPSF7-220ENST00000541963 ZNF219Q9P2Y4 722 aaPredicted RBP12.59□□□□□ -0.39
CPSF7-220ENST00000541963 POTEDQ86YR6 584 aa12.55□□□□□ -0.4
CPSF7-220ENST00000541963 RNF39Q9H2S5 420 aa12.51□□□□□ -0.41
CPSF7-220ENST00000541963 TRHP20396 242 aaPredicted RBP12.47□□□□□ -0.41
CPSF7-220ENST00000541963 C1QBPQ07021 282 aaKnown RBP12.46□□□□□ -0.41
CPSF7-220ENST00000541963 CAPN15O75808 1086 aa12.45□□□□□ -0.42
CPSF7-220ENST00000541963 SPINK5Q9NQ38 1064 aaPredicted RBP12.4□□□□□ -0.42
CPSF7-220ENST00000541963 FBLN2P98095 1184 aa12.36□□□□□ -0.43
CPSF7-220ENST00000541963 POLA2Q14181 598 aa12.33□□□□□ -0.44
CPSF7-220ENST00000541963 ZBTB12Q9Y330 459 aaPredicted RBP12.24□□□□□ -0.45
CPSF7-220ENST00000541963 SPDYE4A6NLX3 237 aa12.23□□□□□ -0.45
CPSF7-220ENST00000541963 AMER1Q5JTC6 1135 aaPredicted RBP12.23□□□□□ -0.45
CPSF7-220ENST00000541963 MKRN4PQ13434 485 aaPredicted RBP12.19□□□□□ -0.46
CPSF7-220ENST00000541963 ABCB7O75027 752 aa12.18□□□□□ -0.46
CPSF7-220ENST00000541963 FBXO3Q9UK99 471 aa12.14□□□□□ -0.47
CPSF7-220ENST00000541963 RTN4Q9NQC3 1192 aaKnown RBP12.1□□□□□ -0.47
CPSF7-220ENST00000541963 DSG3P32926 999 aa12.05□□□□□ -0.48
CPSF7-220ENST00000541963 CACNB1Q02641 598 aaPredicted RBP12□□□□□ -0.49
CPSF7-220ENST00000541963 PROM2Q8N271 834 aa11.97□□□□□ -0.49
CPSF7-220ENST00000541963 ZNF692Q9BU19 519 aaPredicted RBP11.92□□□□□ -0.5
CPSF7-220ENST00000541963 SPDYE2BA6NHP3 402 aa11.88□□□□□ -0.51
CPSF7-220ENST00000541963 SPDYE6P0CI01 402 aa11.88□□□□□ -0.51
CPSF7-220ENST00000541963 SPDYE2Q495Y8 402 aa11.88□□□□□ -0.51
CPSF7-220ENST00000541963 VASPP50552 380 aaPredicted RBP11.87□□□□□ -0.51
CPSF7-220ENST00000541963 OSCARQ8IYS5 282 aa11.85□□□□□ -0.51
CPSF7-220ENST00000541963 STAG3Q9UJ98 1225 aa11.76□□□□□ -0.53
CPSF7-220ENST00000541963 SSUH2Q9Y2M2 353 aa11.75□□□□□ -0.53
CPSF7-220ENST00000541963 PABPN1Q86U42 306 aaKnown RBP eCLIP11.74□□□□□ -0.53
CPSF7-220ENST00000541963 IFNLR1Q8IU57 520 aaPredicted RBP11.68□□□□□ -0.54
CPSF7-220ENST00000541963 KLHL34Q8N239 644 aa11.68□□□□□ -0.54
CPSF7-220ENST00000541963 SLC24A1O60721 1099 aa11.65□□□□□ -0.54
CPSF7-220ENST00000541963 PLCD3Q8N3E9 789 aa11.65□□□□□ -0.54
CPSF7-220ENST00000541963 PLEKHG5O94827 1062 aa11.62□□□□□ -0.55
CPSF7-220ENST00000541963 MIER1Q8N108 512 aa11.62□□□□□ -0.55
CPSF7-220ENST00000541963 RBM42Q9BTD8 480 aaKnown RBP11.59□□□□□ -0.55
CPSF7-220ENST00000541963 SPOCK2Q92563 424 aa11.58□□□□□ -0.56
CPSF7-220ENST00000541963 ZBTB47Q9UFB7 747 aaPredicted RBP11.53□□□□□ -0.56
CPSF7-220ENST00000541963 DCAF8L2P0C7V8 631 aa11.51□□□□□ -0.57
CPSF7-220ENST00000541963 AKT1S1Q96B36 256 aa11.48□□□□□ -0.57
CPSF7-220ENST00000541963 SPDYE1Q8NFV5 336 aaPredicted RBP11.47□□□□□ -0.57
CPSF7-220ENST00000541963 PKD2Q13563 968 aa11.43□□□□□ -0.58
CPSF7-220ENST00000541963 ECM2O94769 699 aaPredicted RBP11.4□□□□□ -0.58
CPSF7-220ENST00000541963 CLEC11AQ9Y240 323 aa11.4□□□□□ -0.58
CPSF7-220ENST00000541963 PRR29P0C7W0 189 aa11.36□□□□□ -0.59
CPSF7-220ENST00000541963 CIZ1Q9ULV3 898 aaPredicted RBP11.36□□□□□ -0.59
CPSF7-220ENST00000541963 REM2Q8IYK8 340 aaPredicted RBP11.34□□□□□ -0.59
CPSF7-220ENST00000541963 CCDC180Q9P1Z9 1646 aa11.32□□□□□ -0.6
CPSF7-220ENST00000541963 TRIM41Q8WV44 630 aa11.28□□□□□ -0.6
CPSF7-220ENST00000541963 PLCB2Q00722 1185 aa11.26□□□□□ -0.61
CPSF7-220ENST00000541963 GSE1Q14687 1217 aa11.26□□□□□ -0.61
CPSF7-220ENST00000541963 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.23□□□□□ -0.61
CPSF7-220ENST00000541963 DCAF8Q5TAQ9 597 aa11.21□□□□□ -0.61
CPSF7-220ENST00000541963 CREBZFQ9NS37 354 aa11.2□□□□□ -0.62
CPSF7-220ENST00000541963 RGL2O15211 777 aa11.19□□□□□ -0.62
CPSF7-220ENST00000541963 PITPNM1O00562 1244 aa11.18□□□□□ -0.62
CPSF7-220ENST00000541963 BBXQ8WY36 941 aaPredicted RBP11.18□□□□□ -0.62
CPSF7-220ENST00000541963 NPM1P06748 294 aaKnown RBP eCLIP11.17□□□□□ -0.62
CPSF7-220ENST00000541963 FAM212AQ96EL1 285 aa11.17□□□□□ -0.62
CPSF7-220ENST00000541963 HAP1P54257 671 aaPredicted RBP11.16□□□□□ -0.62
CPSF7-220ENST00000541963 NUBP1P53384 320 aa11.15□□□□□ -0.62
CPSF7-220ENST00000541963 TAOK2Q9UL54 1235 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms