RNA–Protein interactions for RNA: ENST00000524238.3

HMBOX1-211, Transcript of homeobox containing 1, humanhuman

TSL 2 BASIC

Gene HMBOX1, Length 1,731 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMBOX1-211ENST00000524238 NISCHQ9Y2I1 1504 aa14.44□□□□□ -0.1
HMBOX1-211ENST00000524238 HRCP23327 699 aa12.6□□□□□ -0.39
HMBOX1-211ENST00000524238 SHROOM4Q9ULL8 1493 aa12.37□□□□□ -0.43
HMBOX1-211ENST00000524238 PELP1Q8IZL8 1130 aaKnown RBP12.37□□□□□ -0.43
HMBOX1-211ENST00000524238 SUPT5HO00267 1087 aaKnown RBP12.36□□□□□ -0.43
HMBOX1-211ENST00000524238 AEBP2Q6ZN18 517 aaPredicted RBP12.33□□□□□ -0.44
HMBOX1-211ENST00000524238 ZCCHC6Q5VYS8 1495 aaKnown RBP12.3□□□□□ -0.44
HMBOX1-211ENST00000524238 DCAF1Q9Y4B6 1507 aa12.27□□□□□ -0.44
HMBOX1-211ENST00000524238 CHIC1Q5VXU3 224 aa12.27□□□□□ -0.45
HMBOX1-211ENST00000524238 MYO15BQ96JP2 1530 aa12.24□□□□□ -0.45
HMBOX1-211ENST00000524238 PCGF6Q9BYE7 350 aa12.23□□□□□ -0.45
HMBOX1-211ENST00000524238 CCDC180Q9P1Z9 1646 aa12.23□□□□□ -0.45
HMBOX1-211ENST00000524238 ZEB1P37275 1124 aaPredicted RBP12.11□□□□□ -0.47
HMBOX1-211ENST00000524238 TRIM26Q12899 539 aaPredicted RBP12.06□□□□□ -0.48
HMBOX1-211ENST00000524238 PPARGC1BQ86YN6 1023 aaKnown RBP12.06□□□□□ -0.48
HMBOX1-211ENST00000524238 MYT1Q01538 1121 aa11.99□□□□□ -0.49
HMBOX1-211ENST00000524238 LOC105371045A0A1W2PR82 267 aa11.8□□□□□ -0.52
HMBOX1-211ENST00000524238 SCAF1Q9H7N4 1312 aaKnown RBP11.76□□□□□ -0.53
HMBOX1-211ENST00000524238 ABCC9O60706 1549 aa11.7□□□□□ -0.54
HMBOX1-211ENST00000524238 DCAF8L2P0C7V8 631 aa11.68□□□□□ -0.54
HMBOX1-211ENST00000524238 ACIN1Q9UKV3 1341 aaKnown RBP11.63□□□□□ -0.55
HMBOX1-211ENST00000524238 CENPBP07199 599 aaPredicted RBP11.63□□□□□ -0.55
HMBOX1-211ENST00000524238 TRIM41Q8WV44 630 aa11.59□□□□□ -0.55
HMBOX1-211ENST00000524238 RB1CC1Q8TDY2 1594 aa11.55□□□□□ -0.56
HMBOX1-211ENST00000524238 RSF1Q96T23 1441 aaPredicted RBP11.51□□□□□ -0.57
HMBOX1-211ENST00000524238 NEUROD1Q13562 356 aa11.47□□□□□ -0.57
HMBOX1-211ENST00000524238 DIEXFQ68CQ4 756 aaKnown RBP11.45□□□□□ -0.58
HMBOX1-211ENST00000524238 CCER1Q8TC90 406 aaPredicted RBP11.44□□□□□ -0.58
HMBOX1-211ENST00000524238 GTF3C3Q9Y5Q9 886 aa11.44□□□□□ -0.58
HMBOX1-211ENST00000524238 FAM9AQ8IZU1 332 aaPredicted RBP11.36□□□□□ -0.59
HMBOX1-211ENST00000524238 WRNQ14191 1432 aaPredicted RBP eCLIP11.35□□□□□ -0.59
HMBOX1-211ENST00000524238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.34□□□□□ -0.59
HMBOX1-211ENST00000524238 SCRIBQ14160 1630 aa11.33□□□□□ -0.6
HMBOX1-211ENST00000524238 CLSPNQ9HAW4 1339 aa11.3□□□□□ -0.6
HMBOX1-211ENST00000524238 ZNF316A6NFI3 1004 aaPredicted RBP11.29□□□□□ -0.6
HMBOX1-211ENST00000524238 TTBK1Q5TCY1 1321 aaPredicted RBP11.26□□□□□ -0.61
HMBOX1-211ENST00000524238 BAZ1AQ9NRL2 1556 aaPredicted RBP11.21□□□□□ -0.61
HMBOX1-211ENST00000524238 EEA1Q15075 1411 aa11.2□□□□□ -0.62
HMBOX1-211ENST00000524238 EIF4G1Q04637 1599 aaKnown RBP11.2□□□□□ -0.62
HMBOX1-211ENST00000524238 NACADO15069 1562 aa11.18□□□□□ -0.62
HMBOX1-211ENST00000524238 TNIKQ9UKE5 1360 aa11.18□□□□□ -0.62
HMBOX1-211ENST00000524238 CEP162Q5TB80 1403 aa11.16□□□□□ -0.62
HMBOX1-211ENST00000524238 MROH2BQ7Z745 1585 aa11.16□□□□□ -0.62
HMBOX1-211ENST00000524238 EHMT2Q96KQ7 1210 aa11.15□□□□□ -0.63
HMBOX1-211ENST00000524238 WIZO95785 1651 aa11.13□□□□□ -0.63
HMBOX1-211ENST00000524238 CECR2Q9BXF3 1484 aa11.11□□□□□ -0.63
HMBOX1-211ENST00000524238 YTHDC1Q96MU7 727 aaKnown RBP11.08□□□□□ -0.64
HMBOX1-211ENST00000524238 TOP2AP11388 1531 aaKnown RBP11.06□□□□□ -0.64
HMBOX1-211ENST00000524238 GOLGA3Q08378 1498 aa11.06□□□□□ -0.64
HMBOX1-211ENST00000524238 MIER1Q8N108 512 aa11.06□□□□□ -0.64
HMBOX1-211ENST00000524238 CCDC88BA6NC98 1476 aa11.01□□□□□ -0.65
HMBOX1-211ENST00000524238 CSRNP3Q8WYN3 585 aa11.01□□□□□ -0.65
HMBOX1-211ENST00000524238 ABCC8Q09428 1581 aa10.98□□□□□ -0.65
HMBOX1-211ENST00000524238 KIF21BO75037 1637 aa10.97□□□□□ -0.65
HMBOX1-211ENST00000524238 CEP164Q9UPV0 1460 aa10.97□□□□□ -0.65
HMBOX1-211ENST00000524238 UBTFP17480 764 aaKnown RBP10.97□□□□□ -0.65
HMBOX1-211ENST00000524238 SMARCA2P51531 1590 aa10.97□□□□□ -0.65
HMBOX1-211ENST00000524238 ANP32EQ9BTT0 268 aa10.96□□□□□ -0.65
HMBOX1-211ENST00000524238 SUPT16HQ9Y5B9 1047 aaKnown RBP10.95□□□□□ -0.66
HMBOX1-211ENST00000524238 SOGA1O94964 1423 aa10.95□□□□□ -0.66
HMBOX1-211ENST00000524238 POTEDQ86YR6 584 aa10.94□□□□□ -0.66
HMBOX1-211ENST00000524238 BAZ1BQ9UIG0 1483 aaKnown RBP10.94□□□□□ -0.66
HMBOX1-211ENST00000524238 APLP2Q06481 763 aa10.93□□□□□ -0.66
HMBOX1-211ENST00000524238 SMARCA4P51532 1647 aa10.93□□□□□ -0.66
HMBOX1-211ENST00000524238 VPS8Q8N3P4 1428 aa10.93□□□□□ -0.66
HMBOX1-211ENST00000524238 CLIP1P30622 1438 aa10.89□□□□□ -0.67
HMBOX1-211ENST00000524238 HNRNPUL2Q1KMD3 747 aaKnown RBP10.89□□□□□ -0.67
HMBOX1-211ENST00000524238 TSHZ2Q9NRE2 1034 aa10.87□□□□□ -0.67
HMBOX1-211ENST00000524238 RUSC2Q8N2Y8 1516 aa10.83□□□□□ -0.68
HMBOX1-211ENST00000524238 DHX57Q6P158 1386 aaKnown RBP10.82□□□□□ -0.68
HMBOX1-211ENST00000524238 SENP3Q9H4L4 574 aaPredicted RBP10.81□□□□□ -0.68
HMBOX1-211ENST00000524238 BCL11AQ9H165 835 aa10.81□□□□□ -0.68
HMBOX1-211ENST00000524238 CUX2O14529 1486 aa10.78□□□□□ -0.68
HMBOX1-211ENST00000524238 PEG3Q9GZU2 1588 aa10.76□□□□□ -0.69
HMBOX1-211ENST00000524238 NEFLP07196 543 aa10.75□□□□□ -0.69
HMBOX1-211ENST00000524238 ERICH3Q5RHP9 1530 aa10.75□□□□□ -0.69
HMBOX1-211ENST00000524238 RRBP1Q9P2E9 1410 aaKnown RBP10.74□□□□□ -0.69
HMBOX1-211ENST00000524238 SYNJ1O43426 1573 aa10.73□□□□□ -0.69
HMBOX1-211ENST00000524238 MYT1LQ9UL68 1186 aa10.71□□□□□ -0.69
HMBOX1-211ENST00000524238 RAPGEF2Q9Y4G8 1499 aa10.7□□□□□ -0.7
HMBOX1-211ENST00000524238 TIMELESSQ9UNS1 1208 aa10.67□□□□□ -0.7
HMBOX1-211ENST00000524238 UNC13AQ9UPW8 1703 aa10.66□□□□□ -0.7
HMBOX1-211ENST00000524238 TOP2BQ02880 1626 aa10.66□□□□□ -0.7
HMBOX1-211ENST00000524238 CCER2I3L3R5 266 aa10.66□□□□□ -0.7
HMBOX1-211ENST00000524238 FKBP8Q14318 412 aa10.65□□□□□ -0.7
HMBOX1-211ENST00000524238 CCNB3Q8WWL7 1395 aa10.64□□□□□ -0.71
HMBOX1-211ENST00000524238 RBM19Q9Y4C8 960 aaKnown RBP10.64□□□□□ -0.71
HMBOX1-211ENST00000524238 ARAP1Q96P48 1450 aa10.64□□□□□ -0.71
HMBOX1-211ENST00000524238 BIVM-ERCC5R4GMW8 1640 aa10.64□□□□□ -0.71
HMBOX1-211ENST00000524238 PRXQ9BXM0 1461 aa10.62□□□□□ -0.71
HMBOX1-211ENST00000524238 MAP3K1Q13233 1512 aa10.62□□□□□ -0.71
HMBOX1-211ENST00000524238 FANCIQ9NVI1 1328 aa10.61□□□□□ -0.71
HMBOX1-211ENST00000524238 ERICH6BQ5W0A0 696 aa10.59□□□□□ -0.71
HMBOX1-211ENST00000524238 ERICH6Q7L0X2 663 aa10.58□□□□□ -0.72
HMBOX1-211ENST00000524238 MAPKBP1O60336 1514 aa10.57□□□□□ -0.72
HMBOX1-211ENST00000524238 ANP32CO43423 234 aa10.57□□□□□ -0.72
HMBOX1-211ENST00000524238 BCANQ96GW7 911 aa10.57□□□□□ -0.72
HMBOX1-211ENST00000524238 SETD5Q9C0A6 1442 aa10.56□□□□□ -0.72
HMBOX1-211ENST00000524238 RAB3GAP2Q9H2M9 1393 aa10.55□□□□□ -0.72
HMBOX1-211ENST00000524238 CDK11AQ9UQ88 783 aaPredicted RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms