Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 FTH1-207ENST00000532601 742 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 AP003049.2-201ENST00000532992 540 ntTSL 4 BASIC7.35□□□□□ -1.23
MSX1P28360 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 AC024257.1-201ENST00000547523 566 ntTSL 4 BASIC7.35□□□□□ -1.23
MSX1P28360 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 TGFB3-AS1-201ENST00000553732 580 ntTSL 4 BASIC7.35□□□□□ -1.23
MSX1P28360 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 AL355922.4-201ENST00000555642 449 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 AL132712.1-201ENST00000555967 582 ntTSL 4 BASIC7.35□□□□□ -1.23
MSX1P28360 UBE2Q2P11-201ENST00000559691 205 ntBASIC7.35□□□□□ -1.23
MSX1P28360 MIR4793-201ENST00000577502 87 ntBASIC7.35□□□□□ -1.23
MSX1P28360 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 MIR3714-201ENST00000579507 65 ntBASIC7.35□□□□□ -1.23
MSX1P28360 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC7.35□□□□□ -1.23
MSX1P28360 AC006967.3-201ENST00000594086 1093 ntBASIC7.35□□□□□ -1.23
MSX1P28360 AL161729.4-201ENST00000604650 476 ntBASIC7.35□□□□□ -1.23
MSX1P28360 GMDS-AS1-215ENST00000606884 580 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 RN7SL715P-201ENST00000606972 286 ntBASIC7.35□□□□□ -1.23
MSX1P28360 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC7.35□□□□□ -1.23
MSX1P28360 AL050343.2-201ENST00000607338 280 ntBASIC7.35□□□□□ -1.23
MSX1P28360 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC7.35□□□□□ -1.23
MSX1P28360 AL157359.3-201ENST00000623771 217 ntBASIC7.35□□□□□ -1.23
MSX1P28360 SLC8A1-AS1-228ENST00000627210 225 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 LINC01125-248ENST00000627284 700 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 SP140-205ENST00000420434 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC7.35□□□□□ -1.23
MSX1P28360 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 VIT-202ENST00000379242 2810 ntAPPRIS P3 TSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 KCNJ15-221ENST00000613499 3049 ntAPPRIS P1 TSL 4 BASIC7.35□□□□□ -1.23
MSX1P28360 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC7.35□□□□□ -1.23
MSX1P28360 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSX1P28360 AL031594.1-201ENST00000417123 1932 ntTSL 2 BASIC7.35□□□□□ -1.23
MSX1P28360 DNAJC18-201ENST00000302060 5103 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC7.34□□□□□ -1.23
MSX1P28360 FCGR2A-202ENST00000367972 1399 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 AL133279.3-201ENST00000563140 2352 ntBASIC7.34□□□□□ -1.23
MSX1P28360 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 KIF21A-204ENST00000544797 5040 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 CCDC77-203ENST00000422000 2338 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
MSX1P28360 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.23
MSX1P28360 CDC42SE1-201ENST00000357235 3045 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 AC131392.2-201ENST00000505635 4332 ntBASIC7.34□□□□□ -1.23
MSX1P28360 VNN3-201ENST00000275223 1260 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 LEMD1-202ENST00000367151 869 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 LEMD1-204ENST00000367153 929 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 LEMD1-206ENST00000391936 727 ntTSL 5 BASIC7.34□□□□□ -1.23
MSX1P28360 AC090617.1-201ENST00000413674 323 ntTSL 2 BASIC7.34□□□□□ -1.23
MSX1P28360 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC7.34□□□□□ -1.23
MSX1P28360 MTCO1P20-201ENST00000425366 358 ntBASIC7.34□□□□□ -1.23
MSX1P28360 AC011747.1-201ENST00000425678 565 ntTSL 4 BASIC7.34□□□□□ -1.23
MSX1P28360 LINC00665-202ENST00000427868 690 ntTSL 3 BASIC7.34□□□□□ -1.23
MSX1P28360 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC7.34□□□□□ -1.23
MSX1P28360 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC7.34□□□□□ -1.23
MSX1P28360 CLUHP1-201ENST00000435012 1190 ntBASIC7.34□□□□□ -1.23
MSX1P28360 AL049646.2-201ENST00000436848 258 ntTSL 2 BASIC7.34□□□□□ -1.23
MSX1P28360 PRSS48-201ENST00000441586 560 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 LINC01015-204ENST00000445296 399 ntTSL 3 BASIC7.34□□□□□ -1.23
MSX1P28360 ARL2BPP7-201ENST00000446421 490 ntBASIC7.34□□□□□ -1.23
MSX1P28360 ELOBP1-201ENST00000447693 357 ntBASIC7.34□□□□□ -1.23
MSX1P28360 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC7.34□□□□□ -1.23
MSX1P28360 ARPC3P2-201ENST00000457786 533 ntBASIC7.34□□□□□ -1.23
MSX1P28360 AL122013.1-201ENST00000473054 801 ntBASIC7.34□□□□□ -1.23
MSX1P28360 GAPDHP39-201ENST00000481866 979 ntBASIC7.34□□□□□ -1.23
MSX1P28360 EIF4E2P2-201ENST00000492033 736 ntBASIC7.34□□□□□ -1.23
MSX1P28360 AC008592.1-201ENST00000503091 665 ntTSL 3 BASIC7.34□□□□□ -1.23
MSX1P28360 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.23
MSX1P28360 LINC02428-203ENST00000513793 438 ntTSL 5 BASIC7.34□□□□□ -1.23
MSX1P28360 ADI1P2-201ENST00000514945 429 ntBASIC7.34□□□□□ -1.23
MSX1P28360 Vault.2-201ENST00000516519 98 ntBASIC7.34□□□□□ -1.23
MSX1P28360 RNU6-430P-201ENST00000517078 107 ntBASIC7.34□□□□□ -1.23
MSX1P28360 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC7.34□□□□□ -1.23
MSX1P28360 OSBPL9P2-201ENST00000526582 1228 ntBASIC7.34□□□□□ -1.23
MSX1P28360 OR4C2P-201ENST00000530855 1064 ntBASIC7.34□□□□□ -1.23
MSX1P28360 AP000911.4-201ENST00000532272 516 ntTSL 4 BASIC7.34□□□□□ -1.23
MSX1P28360 AP003721.2-201ENST00000536495 452 ntTSL 3 BASIC7.34□□□□□ -1.23
MSX1P28360 TMEM132D-AS1-204ENST00000537367 531 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
MSX1P28360 MRPL40P1-201ENST00000542687 604 ntBASIC7.34□□□□□ -1.23
MSX1P28360 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
MSX1P28360 AL049870.4-201ENST00000555741 486 ntBASIC7.34□□□□□ -1.23
MSX1P28360 AC103740.1-204ENST00000557994 570 ntTSL 4 BASIC7.34□□□□□ -1.23
MSX1P28360 AC120498.6-201ENST00000564700 338 ntTSL 3 BASIC7.34□□□□□ -1.23
MSX1P28360 AC022558.2-201ENST00000566841 754 ntTSL 5 BASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms