Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.7□□□□□ -1.18
COL18A1P39060 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC7.7□□□□□ -1.18
COL18A1P39060 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
COL18A1P39060 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC7.7□□□□□ -1.18
COL18A1P39060 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 MYT1L-202ENST00000399161 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 AC019205.1-201ENST00000421830 730 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 AP000547.1-201ENST00000454360 617 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 OR2AO1P-201ENST00000476497 403 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.69□□□□□ -1.18
COL18A1P39060 EIF4A2P5-201ENST00000529914 499 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC7.69□□□□□ -1.18
COL18A1P39060 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.69□□□□□ -1.18
COL18A1P39060 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC7.69□□□□□ -1.18
COL18A1P39060 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
COL18A1P39060 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
COL18A1P39060 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
COL18A1P39060 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 MYOM1-202ENST00000356443 5847 ntAPPRIS P4 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 AL161912.4-201ENST00000623889 2468 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.69□□□□□ -1.18
COL18A1P39060 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC7.69□□□□□ -1.18
COL18A1P39060 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 AL109941.1-201ENST00000401925 229 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC7.69□□□□□ -1.18
COL18A1P39060 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC7.69□□□□□ -1.18
COL18A1P39060 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC7.69□□□□□ -1.18
COL18A1P39060 FABP7P2-201ENST00000429946 379 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC7.69□□□□□ -1.18
COL18A1P39060 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC7.69□□□□□ -1.18
COL18A1P39060 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 PGAM1P13-201ENST00000507497 754 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC7.69□□□□□ -1.18
COL18A1P39060 AC110775.1-201ENST00000513721 462 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC7.69□□□□□ -1.18
COL18A1P39060 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC7.69□□□□□ -1.18
COL18A1P39060 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC7.69□□□□□ -1.18
COL18A1P39060 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC7.69□□□□□ -1.18
COL18A1P39060 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC7.69□□□□□ -1.18
COL18A1P39060 RN7SL708P-201ENST00000580952 299 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC7.69□□□□□ -1.18
COL18A1P39060 AC004890.3-201ENST00000605566 1095 ntBASIC7.69□□□□□ -1.18
COL18A1P39060 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL18A1P39060 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC7.68□□□□□ -1.18
COL18A1P39060 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC7.68□□□□□ -1.18
COL18A1P39060 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.68□□□□□ -1.18
COL18A1P39060 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 AC130304.1-201ENST00000622942 2385 ntBASIC7.68□□□□□ -1.18
COL18A1P39060 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC7.68□□□□□ -1.18
COL18A1P39060 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 XIST-206ENST00000434839 2865 ntTSL 5 BASIC7.68□□□□□ -1.18
COL18A1P39060 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
COL18A1P39060 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC7.68□□□□□ -1.18
COL18A1P39060 RAB28P2-201ENST00000454299 641 ntBASIC7.68□□□□□ -1.18
COL18A1P39060 CCDC11P1-201ENST00000503137 1162 ntBASIC7.68□□□□□ -1.18
COL18A1P39060 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC7.68□□□□□ -1.18
COL18A1P39060 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC7.68□□□□□ -1.18
COL18A1P39060 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
COL18A1P39060 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC7.68□□□□□ -1.18
COL18A1P39060 Mico1.1-201ENST00000611698 204 ntBASIC7.68□□□□□ -1.18
COL18A1P39060 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC7.68□□□□□ -1.18
COL18A1P39060 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.68□□□□□ -1.18
COL18A1P39060 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC7.68□□□□□ -1.18
COL18A1P39060 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
COL18A1P39060 AC008467.1-201ENST00000512693 5471 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC7.68□□□□□ -1.18
COL18A1P39060 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL18A1P39060 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC7.67□□□□□ -1.18
COL18A1P39060 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
COL18A1P39060 AC105342.1-201ENST00000378334 6848 ntBASIC7.67□□□□□ -1.18
COL18A1P39060 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL18A1P39060 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
COL18A1P39060 RNU1-106P-201ENST00000384382 164 ntBASIC7.67□□□□□ -1.18
COL18A1P39060 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
COL18A1P39060 RNA5SP339-201ENST00000390987 122 ntBASIC7.67□□□□□ -1.18
COL18A1P39060 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC7.67□□□□□ -1.18
COL18A1P39060 PSMD10P3-201ENST00000437000 448 ntBASIC7.67□□□□□ -1.18
COL18A1P39060 AC068522.1-201ENST00000482895 345 ntBASIC7.67□□□□□ -1.18
COL18A1P39060 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC7.67□□□□□ -1.18
COL18A1P39060 RN7SL570P-201ENST00000484405 292 ntBASIC7.67□□□□□ -1.18
COL18A1P39060 RN7SL30P-201ENST00000488416 306 ntBASIC7.67□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms