Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 HERC3-202ENST00000402738 4974 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HSPG2P98160 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HSPG2P98160 PDE11A-201ENST00000286063 9275 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HSPG2P98160 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
HSPG2P98160 HIST1H3PS1-201ENST00000404612 417 ntBASIC3.56□□□□□ -1.84
HSPG2P98160 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC3.56□□□□□ -1.84
HSPG2P98160 AC019050.1-201ENST00000418508 492 ntBASIC3.56□□□□□ -1.84
HSPG2P98160 CHIAP3-201ENST00000423668 1133 ntBASIC3.56□□□□□ -1.84
HSPG2P98160 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC3.56□□□□□ -1.84
HSPG2P98160 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC3.56□□□□□ -1.84
HSPG2P98160 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.56□□□□□ -1.84
HSPG2P98160 AC087672.1-201ENST00000479876 766 ntBASIC3.56□□□□□ -1.84
HSPG2P98160 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC3.56□□□□□ -1.84
HSPG2P98160 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC3.56□□□□□ -1.84
HSPG2P98160 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.56□□□□□ -1.84
HSPG2P98160 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HSPG2P98160 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC3.56□□□□□ -1.84
HSPG2P98160 EPB41-204ENST00000356093 5857 ntTSL 5 BASIC3.56□□□□□ -1.84
HSPG2P98160 AC105749.1-201ENST00000631338 2008 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 POGK-202ENST00000367876 5754 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 AP000542.3-201ENST00000623391 6114 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 AFG1L-201ENST00000368977 5208 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 CALML4-203ENST00000395465 4155 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 RNA5SP91-201ENST00000390902 119 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 AC097721.1-201ENST00000427150 1253 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC3.55□□□□□ -1.84
HSPG2P98160 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC3.55□□□□□ -1.84
HSPG2P98160 OR7H2P-201ENST00000513483 306 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC3.55□□□□□ -1.84
HSPG2P98160 OR7E158P-201ENST00000524483 910 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 GLRXP2-201ENST00000555594 321 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 AC068724.3-201ENST00000625906 87 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 AL034549.2-201ENST00000618285 3373 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
HSPG2P98160 HLF-210ENST00000575345 3589 ntTSL 2 BASIC3.55□□□□□ -1.84
HSPG2P98160 CCDC88A-202ENST00000336838 9505 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 CACNB2-209ENST00000396576 4464 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 PCDHA4-204ENST00000618834 10557 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 AL136531.3-201ENST00000624378 3658 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 AL162456.1-201ENST00000634535 2006 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
HSPG2P98160 GTF3C1-202ENST00000561623 7015 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 AC005294.1-201ENST00000355509 281 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 AC073072.2-201ENST00000447425 348 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 RN7SL481P-201ENST00000477764 299 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.55□□□□□ -1.84
HSPG2P98160 AL161616.1-201ENST00000611867 286 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 AC009163.6-201ENST00000612367 342 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 NKTR-201ENST00000232978 7343 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC3.55□□□□□ -1.84
HSPG2P98160 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 CLNK-201ENST00000226951 5599 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 ZNF83-211ENST00000597597 4442 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 ADGRE2-201ENST00000315576 6767 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 VCL-201ENST00000211998 5490 ntAPPRIS P4 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 AC008467.1-201ENST00000512693 5471 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 LTBP1-204ENST00000407925 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 INTS6P1-201ENST00000504674 2530 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 CTNND1-210ENST00000524630 6553 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
HSPG2P98160 NLRC5-203ENST00000436936 6724 ntAPPRIS P3 TSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 NHSL2-207ENST00000633930 13660 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 ATXN3-203ENST00000393287 6770 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 OR55B1P-203ENST00000641518 2602 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 NTRK3-212ENST00000558676 4670 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 RNA5SP211-201ENST00000365516 117 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 AC092570.3-201ENST00000420113 693 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 AC008072.1-201ENST00000434254 824 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
HSPG2P98160 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC3.55□□□□□ -1.84
HSPG2P98160 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC3.55□□□□□ -1.84
HSPG2P98160 AC134349.2-201ENST00000535136 910 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.55□□□□□ -1.84
HSPG2P98160 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC3.55□□□□□ -1.84
HSPG2P98160 MIR6780A-201ENST00000615089 68 ntBASIC3.55□□□□□ -1.84
HSPG2P98160 MASP1-203ENST00000337774 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HSPG2P98160 NUDCD2-201ENST00000302764 8005 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms