RNA–Protein interactions for RNA: ENST00000523406.1

LINC00534-203, long intergenic non-protein coding RNA 534, humanhuman

TSL 3 BASIC

Gene LINC00534, Length 812 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00534-203ENST00000523406 AEBP2Q6ZN18 517 aaPredicted RBP24.18■■□□□ 1.46
LINC00534-203ENST00000523406 CHIC1Q5VXU3 224 aa23.95■■□□□ 1.42
LINC00534-203ENST00000523406 PHF23Q9BUL5 403 aaPredicted RBP21.12■□□□□ 0.97
LINC00534-203ENST00000523406 SENP3Q9H4L4 574 aaPredicted RBP20.42■□□□□ 0.86
LINC00534-203ENST00000523406 PLPPR3Q6T4P5 718 aa19.58■□□□□ 0.72
LINC00534-203ENST00000523406 FOXD1Q16676 465 aa18.94■□□□□ 0.62
LINC00534-203ENST00000523406 PPP6R1Q9UPN7 881 aa18.52■□□□□ 0.56
LINC00534-203ENST00000523406 ADRA2BP18089 450 aa18.49■□□□□ 0.55
LINC00534-203ENST00000523406 PIAS4Q8N2W9 510 aaPredicted RBP17.9■□□□□ 0.46
LINC00534-203ENST00000523406 KCNA4P22459 653 aa17.31■□□□□ 0.36
LINC00534-203ENST00000523406 PPP4R3CPQ6ZMV5 832 aa17.31■□□□□ 0.36
LINC00534-203ENST00000523406 MSH5O43196 834 aa17.3■□□□□ 0.36
LINC00534-203ENST00000523406 NCBP3Q53F19 620 aaKnown RBP16.93■□□□□ 0.3
LINC00534-203ENST00000523406 SCAF1Q9H7N4 1312 aaKnown RBP16.89■□□□□ 0.29
LINC00534-203ENST00000523406 CNKSR2Q8WXI2 1034 aa16.75■□□□□ 0.27
LINC00534-203ENST00000523406 NPM3O75607 178 aaKnown RBP16.72■□□□□ 0.27
LINC00534-203ENST00000523406 MAPK8IP2Q13387 824 aaPredicted RBP16.67■□□□□ 0.26
LINC00534-203ENST00000523406 SLC4A1APQ9BWU0 796 aaKnown RBP16.53■□□□□ 0.24
LINC00534-203ENST00000523406 EHMT2Q96KQ7 1210 aa16.43■□□□□ 0.22
LINC00534-203ENST00000523406 DMRT2Q9Y5R5 561 aa16.39■□□□□ 0.21
LINC00534-203ENST00000523406 RNF216Q9NWF9 866 aaPredicted RBP16.34■□□□□ 0.21
LINC00534-203ENST00000523406 DNAJC5BQ9UF47 199 aa16.25■□□□□ 0.19
LINC00534-203ENST00000523406 HOXD11P31277 338 aaPredicted RBP16.2■□□□□ 0.18
LINC00534-203ENST00000523406 CSRNP3Q8WYN3 585 aa16.15■□□□□ 0.18
LINC00534-203ENST00000523406 ZBTB22O15209 634 aa15.96■□□□□ 0.15
LINC00534-203ENST00000523406 FOXD4L1Q9NU39 408 aa15.82■□□□□ 0.12
LINC00534-203ENST00000523406 SLC4A2P04920 1241 aa15.72■□□□□ 0.11
LINC00534-203ENST00000523406 DCAF8L1A6NGE4 600 aa15.57■□□□□ 0.08
LINC00534-203ENST00000523406 MYCNP04198 464 aaPredicted RBP15.43■□□□□ 0.06
LINC00534-203ENST00000523406 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.37■□□□□ 0.05
LINC00534-203ENST00000523406 ATXN8OSP0DMR3 200 aa15.26■□□□□ 0.03
LINC00534-203ENST00000523406 U3KPZ7 1027 aaPredicted RBP15.22■□□□□ 0.03
LINC00534-203ENST00000523406 POTEDQ86YR6 584 aa15.14■□□□□ 0.01
LINC00534-203ENST00000523406 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.1■□□□□ 0.01
LINC00534-203ENST00000523406 HNRNPUL2Q1KMD3 747 aaKnown RBP15.1■□□□□ 0.01
LINC00534-203ENST00000523406 SAMD1Q6SPF0 538 aaPredicted RBP15.07■□□□□ 0
LINC00534-203ENST00000523406 ATF5Q9Y2D1 282 aaPredicted RBP15.01□□□□□ -0.01
LINC00534-203ENST00000523406 RNF39Q9H2S5 420 aa14.88□□□□□ -0.03
LINC00534-203ENST00000523406 APLP2Q06481 763 aa14.85□□□□□ -0.03
LINC00534-203ENST00000523406 ZNF219Q9P2Y4 722 aaPredicted RBP14.72□□□□□ -0.05
LINC00534-203ENST00000523406 C1QBPQ07021 282 aaKnown RBP14.71□□□□□ -0.05
LINC00534-203ENST00000523406 SPINK5Q9NQ38 1064 aaPredicted RBP14.67□□□□□ -0.06
LINC00534-203ENST00000523406 TRHP20396 242 aaPredicted RBP14.57□□□□□ -0.08
LINC00534-203ENST00000523406 CAPN15O75808 1086 aa14.55□□□□□ -0.08
LINC00534-203ENST00000523406 FKBP8Q14318 412 aa14.53□□□□□ -0.08
LINC00534-203ENST00000523406 POLA2Q14181 598 aa14.44□□□□□ -0.1
LINC00534-203ENST00000523406 MKRN4PQ13434 485 aaPredicted RBP14.39□□□□□ -0.11
LINC00534-203ENST00000523406 ABCB7O75027 752 aa14.32□□□□□ -0.12
LINC00534-203ENST00000523406 FBLN2P98095 1184 aa14.3□□□□□ -0.12
LINC00534-203ENST00000523406 DSG3P32926 999 aa14.28□□□□□ -0.12
LINC00534-203ENST00000523406 ZBTB12Q9Y330 459 aaPredicted RBP14.23□□□□□ -0.13
LINC00534-203ENST00000523406 SPDYE4A6NLX3 237 aa14.19□□□□□ -0.14
LINC00534-203ENST00000523406 CACNB1Q02641 598 aaPredicted RBP14.18□□□□□ -0.14
LINC00534-203ENST00000523406 PROM2Q8N271 834 aa14.07□□□□□ -0.16
LINC00534-203ENST00000523406 NISCHQ9Y2I1 1504 aa14.06□□□□□ -0.16
LINC00534-203ENST00000523406 OSCARQ8IYS5 282 aa13.93□□□□□ -0.18
LINC00534-203ENST00000523406 FBXO3Q9UK99 471 aa13.92□□□□□ -0.18
LINC00534-203ENST00000523406 SPDYE2BA6NHP3 402 aa13.89□□□□□ -0.19
LINC00534-203ENST00000523406 SPDYE6P0CI01 402 aa13.89□□□□□ -0.19
LINC00534-203ENST00000523406 SPDYE2Q495Y8 402 aa13.89□□□□□ -0.19
LINC00534-203ENST00000523406 AMER1Q5JTC6 1135 aaPredicted RBP13.87□□□□□ -0.19
LINC00534-203ENST00000523406 ZNF692Q9BU19 519 aaPredicted RBP13.86□□□□□ -0.19
LINC00534-203ENST00000523406 RTN4Q9NQC3 1192 aaKnown RBP13.85□□□□□ -0.19
LINC00534-203ENST00000523406 SSUH2Q9Y2M2 353 aa13.84□□□□□ -0.19
LINC00534-203ENST00000523406 VASPP50552 380 aaPredicted RBP13.74□□□□□ -0.21
LINC00534-203ENST00000523406 PABPN1Q86U42 306 aaKnown RBP eCLIP13.7□□□□□ -0.22
LINC00534-203ENST00000523406 IFNLR1Q8IU57 520 aaPredicted RBP13.59□□□□□ -0.23
LINC00534-203ENST00000523406 STAG3Q9UJ98 1225 aa13.59□□□□□ -0.23
LINC00534-203ENST00000523406 RBM42Q9BTD8 480 aaKnown RBP13.56□□□□□ -0.24
LINC00534-203ENST00000523406 AKT1S1Q96B36 256 aa13.49□□□□□ -0.25
LINC00534-203ENST00000523406 MIER1Q8N108 512 aa13.4□□□□□ -0.26
LINC00534-203ENST00000523406 PLCD3Q8N3E9 789 aa13.4□□□□□ -0.26
LINC00534-203ENST00000523406 SPDYE1Q8NFV5 336 aaPredicted RBP13.38□□□□□ -0.27
LINC00534-203ENST00000523406 REM2Q8IYK8 340 aaPredicted RBP13.37□□□□□ -0.27
LINC00534-203ENST00000523406 KLHL34Q8N239 644 aa13.37□□□□□ -0.27
LINC00534-203ENST00000523406 SPOCK2Q92563 424 aa13.35□□□□□ -0.27
LINC00534-203ENST00000523406 PKD2Q13563 968 aa13.29□□□□□ -0.28
LINC00534-203ENST00000523406 PLEKHG5O94827 1062 aa13.27□□□□□ -0.29
LINC00534-203ENST00000523406 CLEC11AQ9Y240 323 aa13.26□□□□□ -0.29
LINC00534-203ENST00000523406 ZBTB47Q9UFB7 747 aaPredicted RBP13.25□□□□□ -0.29
LINC00534-203ENST00000523406 PITPNM1O00562 1244 aa13.21□□□□□ -0.29
LINC00534-203ENST00000523406 PRR29P0C7W0 189 aa13.21□□□□□ -0.29
LINC00534-203ENST00000523406 CREBZFQ9NS37 354 aa13.17□□□□□ -0.3
LINC00534-203ENST00000523406 MNX1P50219 401 aaPredicted RBP13.11□□□□□ -0.31
LINC00534-203ENST00000523406 ECM2O94769 699 aaPredicted RBP13.09□□□□□ -0.31
LINC00534-203ENST00000523406 SLC24A1O60721 1099 aa13.07□□□□□ -0.32
LINC00534-203ENST00000523406 NUBP1P53384 320 aa13.07□□□□□ -0.32
LINC00534-203ENST00000523406 CIZ1Q9ULV3 898 aaPredicted RBP13.05□□□□□ -0.32
LINC00534-203ENST00000523406 DCAF8L2P0C7V8 631 aa12.99□□□□□ -0.33
LINC00534-203ENST00000523406 RGL2O15211 777 aa12.98□□□□□ -0.33
LINC00534-203ENST00000523406 GSE1Q14687 1217 aa12.98□□□□□ -0.33
LINC00534-203ENST00000523406 TRIM41Q8WV44 630 aa12.98□□□□□ -0.33
LINC00534-203ENST00000523406 CHADLQ6NUI6 762 aa12.94□□□□□ -0.34
LINC00534-203ENST00000523406 NPM1P06748 294 aaKnown RBP eCLIP12.92□□□□□ -0.34
LINC00534-203ENST00000523406 DCAF8Q5TAQ9 597 aa12.92□□□□□ -0.34
LINC00534-203ENST00000523406 RASEFQ8IZ41 740 aa12.92□□□□□ -0.34
LINC00534-203ENST00000523406 FXR2P51116 673 aaKnown RBP eCLIP12.91□□□□□ -0.34
LINC00534-203ENST00000523406 FAM212AQ96EL1 285 aa12.91□□□□□ -0.34
LINC00534-203ENST00000523406 PRKAR2AP13861 404 aaKnown RBP12.86□□□□□ -0.35
LINC00534-203ENST00000523406 CHRDL2Q6WN34 429 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms