RNA–Protein interactions for RNA: ENST00000618834.1

PCDHA4-204, Transcript of protocadherin alpha 4, humanhuman

BASIC

Gene PCDHA4, Length 10,557 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-204ENST00000618834 PELP1Q8IZL8 1130 aaKnown RBP18.98■□□□□ 0.63
PCDHA4-204ENST00000618834 DCAF8L2P0C7V8 631 aa18.7■□□□□ 0.58
PCDHA4-204ENST00000618834 ERICH6Q7L0X2 663 aa18.15■□□□□ 0.5
PCDHA4-204ENST00000618834 MYT1Q01538 1121 aa18.14■□□□□ 0.5
PCDHA4-204ENST00000618834 SUPT5HO00267 1087 aaKnown RBP18.06■□□□□ 0.48
PCDHA4-204ENST00000618834 CCER1Q8TC90 406 aaPredicted RBP18.02■□□□□ 0.48
PCDHA4-204ENST00000618834 CENPBP07199 599 aaPredicted RBP17.86■□□□□ 0.45
PCDHA4-204ENST00000618834 EHMT2Q96KQ7 1210 aa17.79■□□□□ 0.44
PCDHA4-204ENST00000618834 APLP2Q06481 763 aa17.75■□□□□ 0.43
PCDHA4-204ENST00000618834 SHROOM4Q9ULL8 1493 aa17.6■□□□□ 0.41
PCDHA4-204ENST00000618834 NEFLP07196 543 aa17.52■□□□□ 0.4
PCDHA4-204ENST00000618834 ZEB1P37275 1124 aaPredicted RBP17.52■□□□□ 0.39
PCDHA4-204ENST00000618834 PCGF6Q9BYE7 350 aa17.51■□□□□ 0.39
PCDHA4-204ENST00000618834 TTBK1Q5TCY1 1321 aaPredicted RBP17.36■□□□□ 0.37
PCDHA4-204ENST00000618834 FAM9AQ8IZU1 332 aaPredicted RBP17.31■□□□□ 0.36
PCDHA4-204ENST00000618834 YTHDC1Q96MU7 727 aaKnown RBP17.29■□□□□ 0.36
PCDHA4-204ENST00000618834 DAXXQ9UER7 740 aaPredicted RBP17.24■□□□□ 0.35
PCDHA4-204ENST00000618834 NISCHQ9Y2I1 1504 aa17.18■□□□□ 0.34
PCDHA4-204ENST00000618834 RANGAP1P46060 587 aaPredicted RBP16.91■□□□□ 0.3
PCDHA4-204ENST00000618834 RTL5Q5HYW3 569 aaPredicted RBP16.9■□□□□ 0.3
PCDHA4-204ENST00000618834 ZNF316A6NFI3 1004 aaPredicted RBP16.83■□□□□ 0.29
PCDHA4-204ENST00000618834 ATP1B4Q9UN42 357 aaPredicted RBP16.82■□□□□ 0.28
PCDHA4-204ENST00000618834 TRIM41Q8WV44 630 aa16.73■□□□□ 0.27
PCDHA4-204ENST00000618834 UBTFP17480 764 aaKnown RBP16.7■□□□□ 0.26
PCDHA4-204ENST00000618834 HRCP23327 699 aa16.63■□□□□ 0.25
PCDHA4-204ENST00000618834 TRIM26Q12899 539 aaPredicted RBP16.6■□□□□ 0.25
PCDHA4-204ENST00000618834 CLSPNQ9HAW4 1339 aa16.54■□□□□ 0.24
PCDHA4-204ENST00000618834 POLR3GLQ9BT43 218 aa16.53■□□□□ 0.24
PCDHA4-204ENST00000618834 PPARGC1BQ86YN6 1023 aaKnown RBP16.46■□□□□ 0.23
PCDHA4-204ENST00000618834 DIEXFQ68CQ4 756 aaKnown RBP16.33■□□□□ 0.21
PCDHA4-204ENST00000618834 CNGB1Q14028 1251 aaPredicted RBP16.31■□□□□ 0.2
PCDHA4-204ENST00000618834 ITGAEP38570 1179 aa16.28■□□□□ 0.2
PCDHA4-204ENST00000618834 CDK11AQ9UQ88 783 aaPredicted RBP16.26■□□□□ 0.19
PCDHA4-204ENST00000618834 GLIPR1L2Q4G1C9 344 aa16.24■□□□□ 0.19
PCDHA4-204ENST00000618834 SLC4A1APQ9BWU0 796 aaKnown RBP16.24■□□□□ 0.19
PCDHA4-204ENST00000618834 BCANQ96GW7 911 aa16.19■□□□□ 0.18
PCDHA4-204ENST00000618834 MYT1LQ9UL68 1186 aa16.19■□□□□ 0.18
PCDHA4-204ENST00000618834 GTF3C3Q9Y5Q9 886 aa16.18■□□□□ 0.18
PCDHA4-204ENST00000618834 EIF5BO60841 1220 aaKnown RBP16.16■□□□□ 0.18
PCDHA4-204ENST00000618834 HNRNPUL2Q1KMD3 747 aaKnown RBP16.15■□□□□ 0.18
PCDHA4-204ENST00000618834 ZBTB47Q9UFB7 747 aaPredicted RBP16.15■□□□□ 0.18
PCDHA4-204ENST00000618834 ANP32AP39687 249 aaKnown RBP16.13■□□□□ 0.17
PCDHA4-204ENST00000618834 ANP32BQ92688 251 aaKnown RBP16.08■□□□□ 0.16
PCDHA4-204ENST00000618834 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.07■□□□□ 0.16
PCDHA4-204ENST00000618834 CHIC1Q5VXU3 224 aa16.02■□□□□ 0.16
PCDHA4-204ENST00000618834 CANXP27824 592 aaKnown RBP16.01■□□□□ 0.15
PCDHA4-204ENST00000618834 ANP32CO43423 234 aa16■□□□□ 0.15
PCDHA4-204ENST00000618834 NPM2Q86SE8 214 aaKnown RBP15.89■□□□□ 0.13
PCDHA4-204ENST00000618834 LOC105371045A0A1W2PR82 267 aa15.88■□□□□ 0.13
PCDHA4-204ENST00000618834 BCL11AQ9H165 835 aa15.86■□□□□ 0.13
PCDHA4-204ENST00000618834 HSP90AA1P07900 732 aaKnown RBP15.85■□□□□ 0.13
PCDHA4-204ENST00000618834 ACIN1Q9UKV3 1341 aaKnown RBP15.84■□□□□ 0.13
PCDHA4-204ENST00000618834 FAM50AQ14320 339 aaKnown RBP15.84■□□□□ 0.13
PCDHA4-204ENST00000618834 NEUROD1Q13562 356 aa15.82■□□□□ 0.12
PCDHA4-204ENST00000618834 TRIM52Q96A61 297 aa15.77■□□□□ 0.12
PCDHA4-204ENST00000618834 UPF2Q9HAU5 1272 aaKnown RBP15.75■□□□□ 0.11
PCDHA4-204ENST00000618834 SLC24A1O60721 1099 aa15.74■□□□□ 0.11
PCDHA4-204ENST00000618834 ZNF326Q5BKZ1 582 aaKnown RBP15.74■□□□□ 0.11
PCDHA4-204ENST00000618834 NBR1Q14596 966 aa15.72■□□□□ 0.11
PCDHA4-204ENST00000618834 NEFMP07197 916 aa15.72■□□□□ 0.11
PCDHA4-204ENST00000618834 TNNT2P45379 298 aaPredicted RBP15.64■□□□□ 0.09
PCDHA4-204ENST00000618834 ARXQ96QS3 562 aa15.62■□□□□ 0.09
PCDHA4-204ENST00000618834 FKBP8Q14318 412 aa15.6■□□□□ 0.09
PCDHA4-204ENST00000618834 CDK11BP21127 795 aaKnown RBP15.49■□□□□ 0.07
PCDHA4-204ENST00000618834 TRIM44Q96DX7 344 aaPredicted RBP15.46■□□□□ 0.06
PCDHA4-204ENST00000618834 CCDC136Q96JN2 1154 aa15.45■□□□□ 0.06
PCDHA4-204ENST00000618834 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.43■□□□□ 0.06
PCDHA4-204ENST00000618834 HNRNPUQ00839 825 aaKnown RBP eCLIP15.41■□□□□ 0.06
PCDHA4-204ENST00000618834 ANP32EQ9BTT0 268 aa15.4■□□□□ 0.06
PCDHA4-204ENST00000618834 DDRGK1Q96HY6 314 aa15.4■□□□□ 0.06
PCDHA4-204ENST00000618834 BECN1Q14457 450 aa15.39■□□□□ 0.05
PCDHA4-204ENST00000618834 TONSLQ96HA7 1378 aa15.33■□□□□ 0.04
PCDHA4-204ENST00000618834 NCLP19338 710 aaKnown RBP15.33■□□□□ 0.04
PCDHA4-204ENST00000618834 MYH16Q9H6N6 1097 aa15.32■□□□□ 0.04
PCDHA4-204ENST00000618834 NAP1L5Q96NT1 182 aaPredicted RBP15.32■□□□□ 0.04
PCDHA4-204ENST00000618834 GOLGA6L22H0YM25 854 aa15.32■□□□□ 0.04
PCDHA4-204ENST00000618834 PTMAP06454 111 aaKnown RBP15.31■□□□□ 0.04
PCDHA4-204ENST00000618834 FAM9BQ8IZU0 186 aa15.31■□□□□ 0.04
PCDHA4-204ENST00000618834 ERICH6BQ5W0A0 696 aa15.3■□□□□ 0.04
PCDHA4-204ENST00000618834 SCAF1Q9H7N4 1312 aaKnown RBP15.28■□□□□ 0.04
PCDHA4-204ENST00000618834 DNTTIP2Q5QJE6 756 aaKnown RBP15.27■□□□□ 0.04
PCDHA4-204ENST00000618834 ZRSR1Q15695 479 aaKnown RBP15.22■□□□□ 0.03
PCDHA4-204ENST00000618834 DCAF1Q9Y4B6 1507 aa15.21■□□□□ 0.03
PCDHA4-204ENST00000618834 TMC1Q8TDI8 760 aa15.2■□□□□ 0.02
PCDHA4-204ENST00000618834 WDR43Q15061 677 aaKnown RBP eCLIP15.19■□□□□ 0.02
PCDHA4-204ENST00000618834 SALL2Q9Y467 1007 aaPredicted RBP15.18■□□□□ 0.02
PCDHA4-204ENST00000618834 DDX10Q13206 875 aaKnown RBP15.18■□□□□ 0.02
PCDHA4-204ENST00000618834 CCDC180Q9P1Z9 1646 aa15.18■□□□□ 0.02
PCDHA4-204ENST00000618834 IRX6P78412 446 aaPredicted RBP15.16■□□□□ 0.02
PCDHA4-204ENST00000618834 RTN4Q9NQC3 1192 aaKnown RBP15.16■□□□□ 0.02
PCDHA4-204ENST00000618834 GOLGA6L6A8MZA4 724 aa15.14■□□□□ 0.01
PCDHA4-204ENST00000618834 CASC1Q6TDU7 716 aa15.13■□□□□ 0.01
PCDHA4-204ENST00000618834 MRS2Q9HD23 443 aa15.12■□□□□ 0.01
PCDHA4-204ENST00000618834 PPM1GO15355 546 aaPredicted RBP15.11■□□□□ 0.01
PCDHA4-204ENST00000618834 CHAF1AQ13111 956 aaPredicted RBP15.11■□□□□ 0.01
PCDHA4-204ENST00000618834 NOP58Q9Y2X3 529 aaKnown RBP15.06■□□□□ 0
PCDHA4-204ENST00000618834 ZNF777Q9ULD5 760 aaPredicted RBP15.06■□□□□ 0
PCDHA4-204ENST00000618834 AMER1Q5JTC6 1135 aaPredicted RBP15.05■□□□□ 0
PCDHA4-204ENST00000618834 LAS1LQ9Y4W2 734 aaKnown RBP15.05■□□□□ -0
PCDHA4-204ENST00000618834 TPRNQ4KMQ1 711 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms