RNA–Protein interactions for RNA: ENST00000623391.1

AP000542.3-201, humanhuman

BASIC

Gene AP000542.3, Length 6,114 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP000542.3-201ENST00000623391 NISCHQ9Y2I1 1504 aa15.93■□□□□ 0.14
AP000542.3-201ENST00000623391 DCAF8L2P0C7V8 631 aa15.27■□□□□ 0.04
AP000542.3-201ENST00000623391 SUPT5HO00267 1087 aaKnown RBP14.55□□□□□ -0.08
AP000542.3-201ENST00000623391 SHROOM4Q9ULL8 1493 aa14.44□□□□□ -0.1
AP000542.3-201ENST00000623391 APLP2Q06481 763 aa13.95□□□□□ -0.18
AP000542.3-201ENST00000623391 FAM9AQ8IZU1 332 aaPredicted RBP13.93□□□□□ -0.18
AP000542.3-201ENST00000623391 TRIM41Q8WV44 630 aa13.73□□□□□ -0.21
AP000542.3-201ENST00000623391 PELP1Q8IZL8 1130 aaKnown RBP13.69□□□□□ -0.22
AP000542.3-201ENST00000623391 ZEB1P37275 1124 aaPredicted RBP13.67□□□□□ -0.22
AP000542.3-201ENST00000623391 EHMT2Q96KQ7 1210 aa13.65□□□□□ -0.22
AP000542.3-201ENST00000623391 CCDC180Q9P1Z9 1646 aa13.49□□□□□ -0.25
AP000542.3-201ENST00000623391 UBTFP17480 764 aaKnown RBP13.44□□□□□ -0.26
AP000542.3-201ENST00000623391 PCGF6Q9BYE7 350 aa13.43□□□□□ -0.26
AP000542.3-201ENST00000623391 ABCC9O60706 1549 aa13.33□□□□□ -0.28
AP000542.3-201ENST00000623391 CCER1Q8TC90 406 aaPredicted RBP13.32□□□□□ -0.28
AP000542.3-201ENST00000623391 CENPBP07199 599 aaPredicted RBP13.28□□□□□ -0.28
AP000542.3-201ENST00000623391 ZCCHC6Q5VYS8 1495 aaKnown RBP13.27□□□□□ -0.28
AP000542.3-201ENST00000623391 TRIM26Q12899 539 aaPredicted RBP13.26□□□□□ -0.29
AP000542.3-201ENST00000623391 ATP1B4Q9UN42 357 aaPredicted RBP13.25□□□□□ -0.29
AP000542.3-201ENST00000623391 CHIC1Q5VXU3 224 aa13.24□□□□□ -0.29
AP000542.3-201ENST00000623391 RANGAP1P46060 587 aaPredicted RBP13.23□□□□□ -0.29
AP000542.3-201ENST00000623391 TTBK1Q5TCY1 1321 aaPredicted RBP13.23□□□□□ -0.29
AP000542.3-201ENST00000623391 SCRIBQ14160 1630 aa13□□□□□ -0.33
AP000542.3-201ENST00000623391 PABPN1Q86U42 306 aaKnown RBP eCLIP12.99□□□□□ -0.33
AP000542.3-201ENST00000623391 RB1CC1Q8TDY2 1594 aa12.98□□□□□ -0.33
AP000542.3-201ENST00000623391 HRCP23327 699 aa12.96□□□□□ -0.33
AP000542.3-201ENST00000623391 NEFLP07196 543 aa12.95□□□□□ -0.34
AP000542.3-201ENST00000623391 NACADO15069 1562 aa12.94□□□□□ -0.34
AP000542.3-201ENST00000623391 LOC105371045A0A1W2PR82 267 aa12.91□□□□□ -0.34
AP000542.3-201ENST00000623391 DCAF1Q9Y4B6 1507 aa12.9□□□□□ -0.34
AP000542.3-201ENST00000623391 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.89□□□□□ -0.35
AP000542.3-201ENST00000623391 HNRNPUL2Q1KMD3 747 aaKnown RBP12.89□□□□□ -0.35
AP000542.3-201ENST00000623391 ERICH6Q7L0X2 663 aa12.86□□□□□ -0.35
AP000542.3-201ENST00000623391 PPARGC1BQ86YN6 1023 aaKnown RBP12.82□□□□□ -0.36
AP000542.3-201ENST00000623391 ITGAEP38570 1179 aa12.76□□□□□ -0.37
AP000542.3-201ENST00000623391 MYT1LQ9UL68 1186 aa12.76□□□□□ -0.37
AP000542.3-201ENST00000623391 CSRNP3Q8WYN3 585 aa12.74□□□□□ -0.37
AP000542.3-201ENST00000623391 MYT1Q01538 1121 aa12.72□□□□□ -0.37
AP000542.3-201ENST00000623391 FAM50AQ14320 339 aaKnown RBP12.68□□□□□ -0.38
AP000542.3-201ENST00000623391 YTHDC1Q96MU7 727 aaKnown RBP12.67□□□□□ -0.38
AP000542.3-201ENST00000623391 EEA1Q15075 1411 aa12.66□□□□□ -0.38
AP000542.3-201ENST00000623391 CDK11AQ9UQ88 783 aaPredicted RBP12.59□□□□□ -0.39
AP000542.3-201ENST00000623391 BAZ1AQ9NRL2 1556 aaPredicted RBP12.59□□□□□ -0.39
AP000542.3-201ENST00000623391 MYO15BQ96JP2 1530 aa12.59□□□□□ -0.39
AP000542.3-201ENST00000623391 RSF1Q96T23 1441 aaPredicted RBP12.59□□□□□ -0.39
AP000542.3-201ENST00000623391 TRIM52Q96A61 297 aa12.58□□□□□ -0.4
AP000542.3-201ENST00000623391 DIEXFQ68CQ4 756 aaKnown RBP12.55□□□□□ -0.4
AP000542.3-201ENST00000623391 BAZ1BQ9UIG0 1483 aaKnown RBP12.53□□□□□ -0.4
AP000542.3-201ENST00000623391 POLR3GLQ9BT43 218 aa12.53□□□□□ -0.4
AP000542.3-201ENST00000623391 ACIN1Q9UKV3 1341 aaKnown RBP12.5□□□□□ -0.41
AP000542.3-201ENST00000623391 GOLGA3Q08378 1498 aa12.48□□□□□ -0.41
AP000542.3-201ENST00000623391 FBLN2P98095 1184 aa12.48□□□□□ -0.41
AP000542.3-201ENST00000623391 DAXXQ9UER7 740 aaPredicted RBP12.46□□□□□ -0.41
AP000542.3-201ENST00000623391 ZNF316A6NFI3 1004 aaPredicted RBP12.44□□□□□ -0.42
AP000542.3-201ENST00000623391 ANP32CO43423 234 aa12.44□□□□□ -0.42
AP000542.3-201ENST00000623391 NEUROD1Q13562 356 aa12.42□□□□□ -0.42
AP000542.3-201ENST00000623391 WRNQ14191 1432 aaPredicted RBP eCLIP12.42□□□□□ -0.42
AP000542.3-201ENST00000623391 CEP164Q9UPV0 1460 aa12.39□□□□□ -0.43
AP000542.3-201ENST00000623391 CLIP1P30622 1438 aa12.38□□□□□ -0.43
AP000542.3-201ENST00000623391 SMARCA2P51531 1590 aa12.37□□□□□ -0.43
AP000542.3-201ENST00000623391 KIF27Q86VH2 1401 aa12.37□□□□□ -0.43
AP000542.3-201ENST00000623391 CLSPNQ9HAW4 1339 aa12.36□□□□□ -0.43
AP000542.3-201ENST00000623391 P3H3Q8IVL6 736 aa12.36□□□□□ -0.43
AP000542.3-201ENST00000623391 SLC4A1APQ9BWU0 796 aaKnown RBP12.35□□□□□ -0.43
AP000542.3-201ENST00000623391 TNIKQ9UKE5 1360 aa12.34□□□□□ -0.43
AP000542.3-201ENST00000623391 TONSLQ96HA7 1378 aa12.3□□□□□ -0.44
AP000542.3-201ENST00000623391 CEP162Q5TB80 1403 aa12.29□□□□□ -0.44
AP000542.3-201ENST00000623391 NPM1P06748 294 aaKnown RBP eCLIP12.28□□□□□ -0.44
AP000542.3-201ENST00000623391 MTUS2Q5JR59 1369 aa12.28□□□□□ -0.44
AP000542.3-201ENST00000623391 TOP2AP11388 1531 aaKnown RBP12.26□□□□□ -0.45
AP000542.3-201ENST00000623391 ZNF777Q9ULD5 760 aaPredicted RBP12.26□□□□□ -0.45
AP000542.3-201ENST00000623391 ZNF326Q5BKZ1 582 aaKnown RBP12.25□□□□□ -0.45
AP000542.3-201ENST00000623391 CHMP7Q8WUX9 453 aaPredicted RBP12.24□□□□□ -0.45
AP000542.3-201ENST00000623391 CECR2Q9BXF3 1484 aa12.23□□□□□ -0.45
AP000542.3-201ENST00000623391 NEFMP07197 916 aa12.22□□□□□ -0.45
AP000542.3-201ENST00000623391 FHAD1B1AJZ9 1412 aa12.19□□□□□ -0.46
AP000542.3-201ENST00000623391 MROH2BQ7Z745 1585 aa12.19□□□□□ -0.46
AP000542.3-201ENST00000623391 TSPY4P0CV99 314 aa12.18□□□□□ -0.46
AP000542.3-201ENST00000623391 TSPY10P0CW01 314 aa12.18□□□□□ -0.46
AP000542.3-201ENST00000623391 CNGB1Q14028 1251 aaPredicted RBP12.18□□□□□ -0.46
AP000542.3-201ENST00000623391 ESF1Q9H501 851 aaKnown RBP12.17□□□□□ -0.46
AP000542.3-201ENST00000623391 CCDC88BA6NC98 1476 aa12.17□□□□□ -0.46
AP000542.3-201ENST00000623391 ARID3CA6NKF2 412 aa12.16□□□□□ -0.46
AP000542.3-201ENST00000623391 ZBTB47Q9UFB7 747 aaPredicted RBP12.14□□□□□ -0.47
AP000542.3-201ENST00000623391 ERCC6Q03468 1493 aa12.14□□□□□ -0.47
AP000542.3-201ENST00000623391 RTL5Q5HYW3 569 aaPredicted RBP12.14□□□□□ -0.47
AP000542.3-201ENST00000623391 PDS5BQ9NTI5 1447 aa12.12□□□□□ -0.47
AP000542.3-201ENST00000623391 PLEKHD1A6NEE1 506 aa12.1□□□□□ -0.47
AP000542.3-201ENST00000623391 SMARCA4P51532 1647 aa12.1□□□□□ -0.47
AP000542.3-201ENST00000623391 CANXP27824 592 aaKnown RBP12.09□□□□□ -0.47
AP000542.3-201ENST00000623391 CUX2O14529 1486 aa12.08□□□□□ -0.48
AP000542.3-201ENST00000623391 BCANQ96GW7 911 aa12.08□□□□□ -0.48
AP000542.3-201ENST00000623391 GTF3C3Q9Y5Q9 886 aa12.08□□□□□ -0.48
AP000542.3-201ENST00000623391 CARMIL1Q5VZK9 1371 aa12.07□□□□□ -0.48
AP000542.3-201ENST00000623391 STAG3Q9UJ98 1225 aa12.05□□□□□ -0.48
AP000542.3-201ENST00000623391 WIZO95785 1651 aa12.05□□□□□ -0.48
AP000542.3-201ENST00000623391 CHIC2Q9UKJ5 165 aa12.02□□□□□ -0.49
AP000542.3-201ENST00000623391 ABCC8Q09428 1581 aa12.02□□□□□ -0.49
AP000542.3-201ENST00000623391 VPS8Q8N3P4 1428 aa12.02□□□□□ -0.49
AP000542.3-201ENST00000623391 ATAD2BQ9ULI0 1458 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms