Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
RTCBQ9Y3I0 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTCBQ9Y3I0 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RTCBQ9Y3I0 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTCBQ9Y3I0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
RTCBQ9Y3I0 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC25.03■■□□□ 1.6
RTCBQ9Y3I0 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 FBXW4P1-201ENST00000426721 2239 ntBASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 PLK5-205ENST00000642079 1969 ntBASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTCBQ9Y3I0 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 AC141257.4-201ENST00000634557 245 ntBASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 AC136944.6-201ENST00000634818 245 ntBASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
RTCBQ9Y3I0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC25■■□□□ 1.59
RTCBQ9Y3I0 ERF-202ENST00000440177 2032 ntTSL 2 BASIC25■■□□□ 1.59
RTCBQ9Y3I0 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
RTCBQ9Y3I0 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC25■■□□□ 1.59
RTCBQ9Y3I0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC25■■□□□ 1.59
RTCBQ9Y3I0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC25■■□□□ 1.59
RTCBQ9Y3I0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC25■■□□□ 1.59
RTCBQ9Y3I0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC25■■□□□ 1.59
RTCBQ9Y3I0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
RTCBQ9Y3I0 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC25■■□□□ 1.59
RTCBQ9Y3I0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC25■■□□□ 1.59
RTCBQ9Y3I0 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC25■■□□□ 1.59
RTCBQ9Y3I0 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC25■■□□□ 1.59
RTCBQ9Y3I0 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC25■■□□□ 1.59
RTCBQ9Y3I0 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 PCED1CP-201ENST00000419887 785 ntBASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 CD320-202ENST00000537716 1119 ntTSL 2 BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 AC092338.2-201ENST00000568827 1415 ntBASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 AC011558.1-201ENST00000623459 338 ntBASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 AL121956.5-201ENST00000625261 221 ntBASIC24.99■■□□□ 1.59
RTCBQ9Y3I0 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 KRT18P48-201ENST00000434763 852 ntBASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 FAM86EP-206ENST00000510506 987 ntBASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
RTCBQ9Y3I0 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
RTCBQ9Y3I0 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms