Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 AC073130.3-201ENST00000624389 2278 ntBASIC21.19■□□□□ 0.98
SIX4Q9UIU6 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 PCDHAC2-203ENST00000615316 3011 ntBASIC21.19■□□□□ 0.98
SIX4Q9UIU6 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SIX4Q9UIU6 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX4Q9UIU6 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.17■□□□□ 0.98
SIX4Q9UIU6 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX4Q9UIU6 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 YBX1P10-201ENST00000444752 975 ntBASIC21.16■□□□□ 0.98
SIX4Q9UIU6 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 KRT16P5-201ENST00000455284 522 ntBASIC21.16■□□□□ 0.98
SIX4Q9UIU6 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SIX4Q9UIU6 TMEM179-206ENST00000616017 1645 ntBASIC21.15■□□□□ 0.98
SIX4Q9UIU6 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
SIX4Q9UIU6 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX4Q9UIU6 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX4Q9UIU6 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.15■□□□□ 0.98
SIX4Q9UIU6 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX4Q9UIU6 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.15■□□□□ 0.98
SIX4Q9UIU6 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms