Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VAPAQ9P0L0 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VAPAQ9P0L0 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPAQ9P0L0 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPAQ9P0L0 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VAPAQ9P0L0 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPAQ9P0L0 PHGDH-210ENST00000641115 1638 ntBASIC18.67■□□□□ 0.58
VAPAQ9P0L0 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VAPAQ9P0L0 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VAPAQ9P0L0 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VAPAQ9P0L0 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
VAPAQ9P0L0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
VAPAQ9P0L0 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
VAPAQ9P0L0 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
VAPAQ9P0L0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
VAPAQ9P0L0 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
VAPAQ9P0L0 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 HLA-G-202ENST00000376815 851 ntBASIC18.64■□□□□ 0.57
VAPAQ9P0L0 HLA-G-203ENST00000376818 1127 ntBASIC18.64■□□□□ 0.57
VAPAQ9P0L0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 DUX4L16-201ENST00000555130 1264 ntBASIC18.64■□□□□ 0.57
VAPAQ9P0L0 AC137761.2-201ENST00000561729 223 ntBASIC18.64■□□□□ 0.57
VAPAQ9P0L0 AC145350.3-201ENST00000569033 163 ntBASIC18.64■□□□□ 0.57
VAPAQ9P0L0 CYP2T3P-201ENST00000601990 817 ntBASIC18.64■□□□□ 0.57
VAPAQ9P0L0 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VAPAQ9P0L0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms