Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.942e-8■■■■□ 22.7
UPF1Q92900 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC19.72■□□□□ 0.754e-7■■■■□ 22.7
UPF1Q92900 SLC39A9-207ENST00000555840 2377 ntTSL 214.55□□□□□ -0.084e-7■■■■□ 22.7
UPF1Q92900 SLC39A9-201ENST00000031146 5192 ntTSL 5 BASIC12.04□□□□□ -0.484e-7■■■■□ 22.7
UPF1Q92900 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC21.1■□□□□ 0.976e-10■■■■□ 22.7
UPF1Q92900 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.56e-10■■■■□ 22.7
UPF1Q92900 BNIP1-203ENST00000352523 1143 ntTSL 1 (best) BASIC16.99■□□□□ 0.316e-10■■■■□ 22.7
UPF1Q92900 PEX2-206ENST00000522527 1627 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.226e-10■■■■□ 22.7
UPF1Q92900 CCDC125-204ENST00000460090 2273 ntTSL 1 (best)12.38□□□□□ -0.432e-14■■■■□ 22.7
UPF1Q92900 PEX2-204ENST00000520103 1470 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.496e-10■■■■□ 22.7
UPF1Q92900 PEX2-202ENST00000518986 700 ntTSL 311.65□□□□□ -0.546e-10■■■■□ 22.7
UPF1Q92900 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.416e-10■■■■□ 22.7
UPF1Q92900 CTSC-207ENST00000533865 542 ntTSL 416.96■□□□□ 0.311e-7■■■■□ 22.7
UPF1Q92900 CTSC-204ENST00000527018 733 ntTSL 515.87■□□□□ 0.131e-7■■■■□ 22.7
UPF1Q92900 CTSC-201ENST00000227266 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.151e-7■■■■□ 22.7
UPF1Q92900 CTSC-203ENST00000524463 6125 ntTSL 1 (best) BASIC10.48□□□□□ -0.731e-7■■■■□ 22.7
UPF1Q92900 IST1-215ENST00000538850 1125 ntTSL 3 BASIC15.83■□□□□ 0.122e-9■■■■□ 22.6
UPF1Q92900 IST1-209ENST00000536027 823 ntTSL 310.63□□□□□ -0.711e-9■■■■□ 22.6
UPF1Q92900 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC25.19■■□□□ 1.622e-6■■■■□ 22.6
UPF1Q92900 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.342e-6■■■■□ 22.6
UPF1Q92900 C15orf38-AP3S2-203ENST00000559629 675 ntTSL 323.95■■□□□ 1.425e-8■■■■□ 22.6
UPF1Q92900 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC20.38■□□□□ 0.855e-8■■■■□ 22.6
UPF1Q92900 C15orf38-AP3S2-202ENST00000558648 664 ntTSL 518.3■□□□□ 0.525e-8■■■■□ 22.6
UPF1Q92900 AP3S2-213ENST00000560771 740 ntTSL 316.31■□□□□ 0.25e-8■■■■□ 22.6
UPF1Q92900 AP3S2-215ENST00000561410 570 ntTSL 416.31■□□□□ 0.25e-8■■■■□ 22.6
UPF1Q92900 AP3S2-207ENST00000558926 560 ntTSL 216.27■□□□□ 0.25e-8■■■■□ 22.6
UPF1Q92900 AP3S2-206ENST00000558806 578 ntTSL 1 (best)16.04■□□□□ 0.165e-8■■■■□ 22.6
UPF1Q92900 AP3S2-209ENST00000559162 357 ntTSL 215.09■□□□□ 0.015e-8■■■■□ 22.6
UPF1Q92900 AP3S2-203ENST00000557999 578 ntTSL 412.75□□□□□ -0.375e-8■■■■□ 22.6
UPF1Q92900 AP3S2-208ENST00000558999 653 ntTSL 512.53□□□□□ -0.45e-8■■■■□ 22.6
UPF1Q92900 AP3S2-205ENST00000558186 401 ntTSL 412.28□□□□□ -0.445e-8■■■■□ 22.6
UPF1Q92900 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC10.54□□□□□ -0.725e-8■■■■□ 22.6
UPF1Q92900 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.831e-6■■■■□ 22.6
UPF1Q92900 ULK3-212ENST00000566479 2715 ntTSL 1 (best)19.95■□□□□ 0.781e-6■■■■□ 22.6
UPF1Q92900 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.221e-6■■■■□ 22.6
UPF1Q92900 ULK3-222ENST00000570276 2951 ntTSL 1 (best)16.3■□□□□ 0.21e-6■■■■□ 22.6
UPF1Q92900 ULK3-202ENST00000561725 2738 ntTSL 515.59■□□□□ 0.091e-6■■■■□ 22.6
UPF1Q92900 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC25.86■■□□□ 1.731e-9■■■■□ 22.6
UPF1Q92900 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.691e-9■■■■□ 22.6
UPF1Q92900 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.542e-7■■■■□ 22.6
UPF1Q92900 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.172e-7■■■■□ 22.6
UPF1Q92900 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.315e-6■■■■□ 22.6
UPF1Q92900 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.525e-7■■■■□ 22.6
UPF1Q92900 FAM19A5-201ENST00000336769 546 ntTSL 417.37■□□□□ 0.375e-6■■■■□ 22.6
UPF1Q92900 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.163e-7■■■■□ 22.6
UPF1Q92900 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.81■□□□□ 0.123e-7■■■■□ 22.6
UPF1Q92900 METTL16-206ENST00000574623 759 ntTSL 311.98□□□□□ -0.493e-7■■■■□ 22.6
UPF1Q92900 METTL16-205ENST00000571669 5606 ntTSL 511.63□□□□□ -0.553e-7■■■■□ 22.6
UPF1Q92900 METTL16-201ENST00000263092 5711 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.673e-7■■■■□ 22.6
UPF1Q92900 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.99■□□□□ 0.953e-6■■■■□ 22.6
UPF1Q92900 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.373e-6■■■■□ 22.6
UPF1Q92900 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.083e-6■■■■□ 22.6
UPF1Q92900 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.033e-6■■■■□ 22.6
UPF1Q92900 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.063e-6■■■■□ 22.6
UPF1Q92900 AC004224.2-201ENST00000574423 529 ntTSL 5 BASIC12.68□□□□□ -0.383e-6■■■■□ 22.6
UPF1Q92900 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.663e-45■■■■□ 22.6
UPF1Q92900 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.135e-21■■■■□ 22.6
UPF1Q92900 TSPAN14-206ENST00000372164 5476 ntTSL 1 (best) BASIC11.85□□□□□ -0.514e-7■■■■□ 22.6
UPF1Q92900 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.434e-7■■■■□ 22.6
UPF1Q92900 SLC31A1-201ENST00000374212 4744 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.982e-8■■■■□ 22.6
UPF1Q92900 TAF15-201ENST00000603067 580 ntTSL 59.54□□□□□ -0.882e-9■■■■□ 22.6
UPF1Q92900 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC8.63□□□□□ -1.032e-9■■■■□ 22.6
UPF1Q92900 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.311e-6■■■■□ 22.6
UPF1Q92900 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.151e-6■■■■□ 22.5
UPF1Q92900 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC15.73■□□□□ 0.111e-6■■■■□ 22.5
UPF1Q92900 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.69■□□□□ 0.11e-6■■■■□ 22.5
UPF1Q92900 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.33■□□□□ 0.041e-6■■■■□ 22.5
UPF1Q92900 WDR81-201ENST00000309182 3808 ntTSL 2 BASIC13.8□□□□□ -0.21e-6■■■■□ 22.5
UPF1Q92900 WDR81-208ENST00000464528 4432 ntTSL 213.54□□□□□ -0.241e-6■■■■□ 22.5
UPF1Q92900 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.115e-19■■■■□ 22.5
UPF1Q92900 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.224e-15■■■■□ 22.5
UPF1Q92900 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.312e-8■■■■□ 22.5
UPF1Q92900 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.12e-8■■■■□ 22.5
UPF1Q92900 POLR2E-202ENST00000585838 487 ntTSL 513.48□□□□□ -0.251e-7■■■■□ 22.5
UPF1Q92900 MASP1-211ENST00000468121 498 ntTSL 313.92□□□□□ -0.182e-6■■■■□ 22.5
UPF1Q92900 MASP1-212ENST00000480349 5982 ntTSL 212.18□□□□□ -0.462e-6■■■■□ 22.5
UPF1Q92900 MASP1-203ENST00000337774 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.712e-6■■■■□ 22.5
UPF1Q92900 MASP1-202ENST00000296280 4015 ntAPPRIS P4 TSL 1 (best) BASIC10.42□□□□□ -0.742e-6■■■■□ 22.5
UPF1Q92900 MASP1-205ENST00000392472 3900 ntTSL 1 (best) BASIC8.38□□□□□ -1.072e-6■■■■□ 22.5
UPF1Q92900 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.362e-6■■■■□ 22.5
UPF1Q92900 SHISA5-214ENST00000486344 713 ntTSL 223.75■■□□□ 1.392e-11■■■■□ 22.5
UPF1Q92900 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC25.85■■□□□ 1.731e-6■■■■□ 22.5
UPF1Q92900 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.752e-7■■■■□ 22.5
UPF1Q92900 CPPED1-202ENST00000381774 6273 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.53e-7■■■■□ 22.5
UPF1Q92900 IRGQ-202ENST00000596409 3752 nt6.38□□□□□ -1.394e-7■■■■□ 22.5
UPF1Q92900 PHACTR1-201ENST00000332995 5332 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.762e-6■■■■□ 22.5
UPF1Q92900 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.012e-7■■■■□ 22.5
UPF1Q92900 EIF4EBP1-202ENST00000520657 695 ntTSL 314.4□□□□□ -0.12e-7■■■■□ 22.5
UPF1Q92900 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.41e-6■■■■□ 22.5
UPF1Q92900 CHTF8-206ENST00000519534 723 ntTSL 214.03□□□□□ -0.164e-8■■■■□ 22.5
UPF1Q92900 NCDN-204ENST00000423723 986 ntTSL 316.37■□□□□ 0.211e-6■■■■□ 22.5
UPF1Q92900 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC13.78□□□□□ -0.21e-6■■■■□ 22.5
UPF1Q92900 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.351e-6■■■■□ 22.5
UPF1Q92900 NCDN-202ENST00000373243 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.491e-6■■■■□ 22.5
UPF1Q92900 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC30.38■■■□□ 2.458e-17■■■■□ 22.5
UPF1Q92900 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.488e-17■■■■□ 22.5
UPF1Q92900 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC13.72□□□□□ -0.212e-8■■■■□ 22.5
UPF1Q92900 ACOX1-208ENST00000588968 706 ntTSL 511.1□□□□□ -0.632e-8■■■■□ 22.5
UPF1Q92900 ACOX1-206ENST00000587927 775 ntTSL 310.15□□□□□ -0.782e-8■■■■□ 22.5
UPF1Q92900 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.733e-9■■■■□ 22.5
Retrieved 100 of 15,879 protein–RNA pairs in 168.7 ms