Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
RFC4P35249 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
RFC4P35249 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
RFC4P35249 FBXW4P1-201ENST00000426721 2239 ntBASIC24.93■■□□□ 1.58
RFC4P35249 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC24.93■■□□□ 1.58
RFC4P35249 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
RFC4P35249 MYB-221ENST00000527615 2381 ntTSL 5 BASIC24.93■■□□□ 1.58
RFC4P35249 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24.93■■□□□ 1.58
RFC4P35249 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC24.93■■□□□ 1.58
RFC4P35249 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
RFC4P35249 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC24.93■■□□□ 1.58
RFC4P35249 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC24.93■■□□□ 1.58
RFC4P35249 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
RFC4P35249 COPS8-203ENST00000409334 794 ntTSL 5 BASIC24.93■■□□□ 1.58
RFC4P35249 AC007663.1-201ENST00000438948 1240 ntBASIC24.93■■□□□ 1.58
RFC4P35249 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC24.93■■□□□ 1.58
RFC4P35249 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC24.93■■□□□ 1.58
RFC4P35249 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC24.93■■□□□ 1.58
RFC4P35249 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC24.93■■□□□ 1.58
RFC4P35249 AC010653.2-201ENST00000623505 997 ntBASIC24.93■■□□□ 1.58
RFC4P35249 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC24.93■■□□□ 1.58
RFC4P35249 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC24.93■■□□□ 1.58
RFC4P35249 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC24.93■■□□□ 1.58
RFC4P35249 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC24.93■■□□□ 1.58
RFC4P35249 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
RFC4P35249 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
RFC4P35249 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
RFC4P35249 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC24.92■■□□□ 1.58
RFC4P35249 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC24.92■■□□□ 1.58
RFC4P35249 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.92■■□□□ 1.58
RFC4P35249 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC24.92■■□□□ 1.58
RFC4P35249 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC24.92■■□□□ 1.58
RFC4P35249 HLA-A-209ENST00000638375 975 ntBASIC24.92■■□□□ 1.58
RFC4P35249 PLK5-205ENST00000642079 1969 ntBASIC24.92■■□□□ 1.58
RFC4P35249 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC24.92■■□□□ 1.58
RFC4P35249 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
RFC4P35249 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
RFC4P35249 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC24.91■■□□□ 1.58
RFC4P35249 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC24.91■■□□□ 1.58
RFC4P35249 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC24.91■■□□□ 1.58
RFC4P35249 PTPA-216ENST00000432651 857 ntTSL 2 BASIC24.91■■□□□ 1.58
RFC4P35249 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC24.91■■□□□ 1.58
RFC4P35249 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC24.91■■□□□ 1.58
RFC4P35249 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC24.91■■□□□ 1.58
RFC4P35249 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC24.91■■□□□ 1.58
RFC4P35249 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC24.91■■□□□ 1.58
RFC4P35249 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC24.91■■□□□ 1.58
RFC4P35249 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC24.91■■□□□ 1.58
RFC4P35249 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
RFC4P35249 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
RFC4P35249 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
RFC4P35249 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC24.9■■□□□ 1.58
RFC4P35249 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC24.9■■□□□ 1.58
RFC4P35249 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC24.9■■□□□ 1.58
RFC4P35249 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
RFC4P35249 TPM4P1-201ENST00000436100 807 ntBASIC24.9■■□□□ 1.58
RFC4P35249 CD320-202ENST00000537716 1119 ntTSL 2 BASIC24.9■■□□□ 1.58
RFC4P35249 AC011558.1-201ENST00000623459 338 ntBASIC24.9■■□□□ 1.58
RFC4P35249 AC141257.4-201ENST00000634557 245 ntBASIC24.9■■□□□ 1.58
RFC4P35249 AC136944.6-201ENST00000634818 245 ntBASIC24.9■■□□□ 1.58
RFC4P35249 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
RFC4P35249 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
RFC4P35249 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
RFC4P35249 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC24.9■■□□□ 1.58
RFC4P35249 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
RFC4P35249 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
RFC4P35249 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.89■■□□□ 1.58
RFC4P35249 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
RFC4P35249 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC24.89■■□□□ 1.58
RFC4P35249 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
RFC4P35249 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
RFC4P35249 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
RFC4P35249 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
RFC4P35249 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
RFC4P35249 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC24.89■■□□□ 1.58
RFC4P35249 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC24.89■■□□□ 1.58
RFC4P35249 PCED1CP-201ENST00000419887 785 ntBASIC24.89■■□□□ 1.58
RFC4P35249 KRT18P48-201ENST00000434763 852 ntBASIC24.89■■□□□ 1.58
RFC4P35249 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms