Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SIMC1-201ENST00000332772 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 BTN2A2-202ENST00000356709 3590 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 AF131215.2-201ENST00000531549 1710 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 FGG-201ENST00000336098 1659 ntTSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 SLC44A2-202ENST00000407327 3301 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 KIAA1671-202ENST00000401395 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 DCAF4-212ENST00000553457 2896 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 TARID-209ENST00000630119 4294 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 HS3ST5-202ENST00000411826 2744 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 ACTR2-201ENST00000260641 3861 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 CALCOCO1-210ENST00000548263 3888 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 ENSAP3-201ENST00000312710 333 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 Y_RNA.97-201ENST00000363094 102 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 MIR551B-201ENST00000384984 96 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
COL9A1P20849 U3.38-201ENST00000408534 216 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 AL513302.1-201ENST00000415679 428 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC8.66□□□□□ -1.02
COL9A1P20849 AL354732.1-204ENST00000421020 755 ntTSL 3 BASIC8.66□□□□□ -1.02
COL9A1P20849 AC006017.1-201ENST00000424630 673 ntTSL 3 BASIC8.66□□□□□ -1.02
COL9A1P20849 BLOC1S2P1-201ENST00000428431 301 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC8.66□□□□□ -1.02
COL9A1P20849 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 HMGN1P36-201ENST00000446623 298 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 OR51P1P-201ENST00000447547 942 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 CEACAMP4-201ENST00000457676 421 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 ABCA9-AS1-201ENST00000458677 523 ntTSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 RNU6-420P-201ENST00000458780 107 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 RN7SL333P-201ENST00000476398 297 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 RPL7P38-201ENST00000488396 739 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 RN7SL182P-201ENST00000496499 300 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 AC108078.3-201ENST00000502633 489 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC8.66□□□□□ -1.02
COL9A1P20849 IGHVII-60-1-201ENST00000519079 256 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 CASC19-203ENST00000523510 575 ntTSL 3 BASIC8.66□□□□□ -1.02
COL9A1P20849 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC8.66□□□□□ -1.02
COL9A1P20849 RGS5-218ENST00000526176 574 ntTSL 4 BASIC8.66□□□□□ -1.02
COL9A1P20849 SDHCP4-201ENST00000532834 510 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 OR5BN1P-201ENST00000532955 829 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 NELL2-211ENST00000548826 559 ntTSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 ACTN1-AS1-201ENST00000553944 484 ntTSL 3 BASIC8.66□□□□□ -1.02
COL9A1P20849 AC013452.1-201ENST00000560630 598 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 MIR378H-201ENST00000579966 83 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 PRELID3BP8-201ENST00000604148 295 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 AC092650.2-201ENST00000619984 902 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 AL121985.2-201ENST00000621192 555 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 AC015722.2-201ENST00000622210 551 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 AC006840.1-201ENST00000623069 542 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC8.66□□□□□ -1.02
COL9A1P20849 ATM-228ENST00000639240 498 ntTSL 5 BASIC8.66□□□□□ -1.02
COL9A1P20849 CNTNAP4-201ENST00000307431 4867 ntAPPRIS ALT1 TSL 5 BASIC8.66□□□□□ -1.02
COL9A1P20849 CNTNAP4-207ENST00000611870 4867 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 TMPRSS4-220ENST00000618855 3531 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 OTOA-202ENST00000388956 3466 ntAPPRIS ALT2 TSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 TJAP1-215ENST00000612912 4312 ntTSL 2 BASIC8.66□□□□□ -1.02
COL9A1P20849 SERPINA1-201ENST00000355814 3236 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 C10orf126-201ENST00000375520 2149 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 ARHGAP32-206ENST00000527272 5289 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 MYRFL-205ENST00000552032 3139 ntAPPRIS P2 TSL 5 BASIC8.66□□□□□ -1.02
COL9A1P20849 DUSP3-201ENST00000226004 4110 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 ANKEF1-202ENST00000378392 2894 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 SLC8A1-209ENST00000408028 2898 ntTSL 5 BASIC8.66□□□□□ -1.02
COL9A1P20849 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
COL9A1P20849 AC015689.2-201ENST00000528172 1738 ntBASIC8.66□□□□□ -1.02
COL9A1P20849 C5orf66-205ENST00000555438 3246 ntTSL 3 BASIC8.65□□□□□ -1.02
COL9A1P20849 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC8.65□□□□□ -1.02
COL9A1P20849 ABCE1-201ENST00000296577 3921 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 ESCO2-201ENST00000305188 3922 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 LCT-201ENST00000264162 6279 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 RPGR-201ENST00000318842 3108 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 DIP2A-202ENST00000417564 6967 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 FLJ36000-201ENST00000612344 3801 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 HDLBP-201ENST00000310931 4571 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 CYP4Z2P-201ENST00000423332 1512 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 CACNA1C-225ENST00000480911 6811 ntTSL 5 BASIC8.65□□□□□ -1.02
COL9A1P20849 LINC00265-201ENST00000340510 3049 ntTSL 5 BASIC8.65□□□□□ -1.02
COL9A1P20849 EFTUD2-201ENST00000402521 3045 ntTSL 2 BASIC8.65□□□□□ -1.02
COL9A1P20849 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC8.65□□□□□ -1.02
COL9A1P20849 C4orf46-201ENST00000379205 3521 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC8.65□□□□□ -1.02
COL9A1P20849 PPP2R1B-201ENST00000311129 2082 ntAPPRIS P4 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 C1orf87-201ENST00000371201 2028 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 AC021242.1-201ENST00000507315 2035 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC8.65□□□□□ -1.02
COL9A1P20849 ZNF615-208ENST00000598071 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 TBC1D22A-AS1-202ENST00000640274 1951 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 LINC02072-201ENST00000441895 2645 ntTSL 2 BASIC8.65□□□□□ -1.02
COL9A1P20849 RPAP1-202ENST00000561603 3906 ntTSL 5 BASIC8.65□□□□□ -1.02
COL9A1P20849 AC010132.2-201ENST00000295493 1043 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 MIR369-201ENST00000362155 70 ntBASIC8.65□□□□□ -1.02
COL9A1P20849 CENPW-201ENST00000368325 528 ntTSL 3 BASIC8.65□□□□□ -1.02
COL9A1P20849 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC8.65□□□□□ -1.02
COL9A1P20849 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
COL9A1P20849 VN1R8P-201ENST00000407739 893 ntBASIC8.65□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms