RNA–Protein interactions for RNA: ENST00000226004.7

DUSP3-201, Transcript of dual specificity phosphatase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DUSP3, Length 4,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DUSP3-201ENST00000226004 NISCHQ9Y2I1 1504 aa17.92■□□□□ 0.46
DUSP3-201ENST00000226004 DCAF8L2P0C7V8 631 aa16.6■□□□□ 0.25
DUSP3-201ENST00000226004 SHROOM4Q9ULL8 1493 aa16.36■□□□□ 0.21
DUSP3-201ENST00000226004 SUPT5HO00267 1087 aaKnown RBP16.24■□□□□ 0.19
DUSP3-201ENST00000226004 EHMT2Q96KQ7 1210 aa15.38■□□□□ 0.05
DUSP3-201ENST00000226004 PCGF6Q9BYE7 350 aa15.19■□□□□ 0.02
DUSP3-201ENST00000226004 FAM9AQ8IZU1 332 aaPredicted RBP15.18■□□□□ 0.02
DUSP3-201ENST00000226004 CHIC1Q5VXU3 224 aa15.12■□□□□ 0.01
DUSP3-201ENST00000226004 HRCP23327 699 aa15.04■□□□□ -0
DUSP3-201ENST00000226004 LOC105371045A0A1W2PR82 267 aa15□□□□□ -0.01
DUSP3-201ENST00000226004 ZCCHC6Q5VYS8 1495 aaKnown RBP14.99□□□□□ -0.01
DUSP3-201ENST00000226004 TRIM41Q8WV44 630 aa14.96□□□□□ -0.02
DUSP3-201ENST00000226004 PPARGC1BQ86YN6 1023 aaKnown RBP14.88□□□□□ -0.03
DUSP3-201ENST00000226004 ABCC9O60706 1549 aa14.84□□□□□ -0.03
DUSP3-201ENST00000226004 TTBK1Q5TCY1 1321 aaPredicted RBP14.81□□□□□ -0.04
DUSP3-201ENST00000226004 CCDC180Q9P1Z9 1646 aa14.8□□□□□ -0.04
DUSP3-201ENST00000226004 PELP1Q8IZL8 1130 aaKnown RBP14.73□□□□□ -0.05
DUSP3-201ENST00000226004 MYT1Q01538 1121 aa14.66□□□□□ -0.06
DUSP3-201ENST00000226004 MYO15BQ96JP2 1530 aa14.59□□□□□ -0.07
DUSP3-201ENST00000226004 RANGAP1P46060 587 aaPredicted RBP14.59□□□□□ -0.07
DUSP3-201ENST00000226004 SCRIBQ14160 1630 aa14.57□□□□□ -0.08
DUSP3-201ENST00000226004 PABPN1Q86U42 306 aaKnown RBP eCLIP14.54□□□□□ -0.08
DUSP3-201ENST00000226004 TRIM26Q12899 539 aaPredicted RBP14.54□□□□□ -0.08
DUSP3-201ENST00000226004 ZEB1P37275 1124 aaPredicted RBP14.51□□□□□ -0.09
DUSP3-201ENST00000226004 UBTFP17480 764 aaKnown RBP14.49□□□□□ -0.09
DUSP3-201ENST00000226004 CCER1Q8TC90 406 aaPredicted RBP14.39□□□□□ -0.11
DUSP3-201ENST00000226004 APLP2Q06481 763 aa14.36□□□□□ -0.11
DUSP3-201ENST00000226004 RSF1Q96T23 1441 aaPredicted RBP14.34□□□□□ -0.11
DUSP3-201ENST00000226004 CENPBP07199 599 aaPredicted RBP14.31□□□□□ -0.12
DUSP3-201ENST00000226004 DCAF1Q9Y4B6 1507 aa14.28□□□□□ -0.12
DUSP3-201ENST00000226004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.24□□□□□ -0.13
DUSP3-201ENST00000226004 CECR2Q9BXF3 1484 aa14.21□□□□□ -0.14
DUSP3-201ENST00000226004 YTHDC1Q96MU7 727 aaKnown RBP14.14□□□□□ -0.15
DUSP3-201ENST00000226004 SCAF1Q9H7N4 1312 aaKnown RBP14.13□□□□□ -0.15
DUSP3-201ENST00000226004 HNRNPUL2Q1KMD3 747 aaKnown RBP14.12□□□□□ -0.15
DUSP3-201ENST00000226004 ATP1B4Q9UN42 357 aaPredicted RBP14.11□□□□□ -0.15
DUSP3-201ENST00000226004 RB1CC1Q8TDY2 1594 aa14.06□□□□□ -0.16
DUSP3-201ENST00000226004 GTF3C3Q9Y5Q9 886 aa14.06□□□□□ -0.16
DUSP3-201ENST00000226004 NACADO15069 1562 aa14.05□□□□□ -0.16
DUSP3-201ENST00000226004 CSRNP3Q8WYN3 585 aa14.03□□□□□ -0.16
DUSP3-201ENST00000226004 MROH2BQ7Z745 1585 aa14.02□□□□□ -0.16
DUSP3-201ENST00000226004 ITGAEP38570 1179 aa14□□□□□ -0.17
DUSP3-201ENST00000226004 DIEXFQ68CQ4 756 aaKnown RBP14□□□□□ -0.17
DUSP3-201ENST00000226004 ACIN1Q9UKV3 1341 aaKnown RBP14□□□□□ -0.17
DUSP3-201ENST00000226004 NEUROD1Q13562 356 aa13.92□□□□□ -0.18
DUSP3-201ENST00000226004 WIZO95785 1651 aa13.87□□□□□ -0.19
DUSP3-201ENST00000226004 BAZ1AQ9NRL2 1556 aaPredicted RBP13.83□□□□□ -0.19
DUSP3-201ENST00000226004 ABCC8Q09428 1581 aa13.79□□□□□ -0.2
DUSP3-201ENST00000226004 SOGA1O94964 1423 aa13.79□□□□□ -0.2
DUSP3-201ENST00000226004 CCDC88BA6NC98 1476 aa13.77□□□□□ -0.21
DUSP3-201ENST00000226004 CEP162Q5TB80 1403 aa13.74□□□□□ -0.21
DUSP3-201ENST00000226004 P3H3Q8IVL6 736 aa13.74□□□□□ -0.21
DUSP3-201ENST00000226004 WRNQ14191 1432 aaPredicted RBP eCLIP13.71□□□□□ -0.21
DUSP3-201ENST00000226004 FAM50AQ14320 339 aaKnown RBP13.66□□□□□ -0.22
DUSP3-201ENST00000226004 BAZ1BQ9UIG0 1483 aaKnown RBP13.65□□□□□ -0.22
DUSP3-201ENST00000226004 ZNF316A6NFI3 1004 aaPredicted RBP13.65□□□□□ -0.22
DUSP3-201ENST00000226004 CLIP1P30622 1438 aa13.63□□□□□ -0.23
DUSP3-201ENST00000226004 ERICH6Q7L0X2 663 aa13.62□□□□□ -0.23
DUSP3-201ENST00000226004 TNIKQ9UKE5 1360 aa13.62□□□□□ -0.23
DUSP3-201ENST00000226004 RUSC2Q8N2Y8 1516 aa13.61□□□□□ -0.23
DUSP3-201ENST00000226004 GOLGA3Q08378 1498 aa13.59□□□□□ -0.23
DUSP3-201ENST00000226004 TOP2AP11388 1531 aaKnown RBP13.59□□□□□ -0.23
DUSP3-201ENST00000226004 SMARCA4P51532 1647 aa13.57□□□□□ -0.24
DUSP3-201ENST00000226004 EEA1Q15075 1411 aa13.56□□□□□ -0.24
DUSP3-201ENST00000226004 ARID3CA6NKF2 412 aa13.54□□□□□ -0.24
DUSP3-201ENST00000226004 NEFLP07196 543 aa13.49□□□□□ -0.25
DUSP3-201ENST00000226004 CEP164Q9UPV0 1460 aa13.49□□□□□ -0.25
DUSP3-201ENST00000226004 MIER1Q8N108 512 aa13.49□□□□□ -0.25
DUSP3-201ENST00000226004 SMARCA2P51531 1590 aa13.47□□□□□ -0.25
DUSP3-201ENST00000226004 BCANQ96GW7 911 aa13.46□□□□□ -0.25
DUSP3-201ENST00000226004 ATAD2BQ9ULI0 1458 aa13.45□□□□□ -0.26
DUSP3-201ENST00000226004 CNGB1Q14028 1251 aaPredicted RBP13.42□□□□□ -0.26
DUSP3-201ENST00000226004 SLC24A1O60721 1099 aa13.42□□□□□ -0.26
DUSP3-201ENST00000226004 KANK4Q5T7N3 995 aaPredicted RBP13.4□□□□□ -0.26
DUSP3-201ENST00000226004 KIF27Q86VH2 1401 aa13.38□□□□□ -0.27
DUSP3-201ENST00000226004 RAPGEF2Q9Y4G8 1499 aa13.38□□□□□ -0.27
DUSP3-201ENST00000226004 FBLN2P98095 1184 aa13.37□□□□□ -0.27
DUSP3-201ENST00000226004 TRIM52Q96A61 297 aa13.37□□□□□ -0.27
DUSP3-201ENST00000226004 PRKCSHP14314 528 aaPredicted RBP13.36□□□□□ -0.27
DUSP3-201ENST00000226004 POLR3GLQ9BT43 218 aa13.35□□□□□ -0.27
DUSP3-201ENST00000226004 VPS8Q8N3P4 1428 aa13.33□□□□□ -0.28
DUSP3-201ENST00000226004 HIRIP3Q9BW71 556 aaPredicted RBP13.33□□□□□ -0.28
DUSP3-201ENST00000226004 CUX2O14529 1486 aa13.3□□□□□ -0.28
DUSP3-201ENST00000226004 CHIC2Q9UKJ5 165 aa13.28□□□□□ -0.28
DUSP3-201ENST00000226004 DDX10Q13206 875 aaKnown RBP13.26□□□□□ -0.29
DUSP3-201ENST00000226004 CARMIL1Q5VZK9 1371 aa13.25□□□□□ -0.29
DUSP3-201ENST00000226004 SYNJ1O43426 1573 aa13.23□□□□□ -0.29
DUSP3-201ENST00000226004 BICRAQ9NZM4 1560 aa13.23□□□□□ -0.29
DUSP3-201ENST00000226004 SIN3AQ96ST3 1273 aa13.23□□□□□ -0.29
DUSP3-201ENST00000226004 FKBP8Q14318 412 aa13.21□□□□□ -0.3
DUSP3-201ENST00000226004 MTUS2Q5JR59 1369 aa13.2□□□□□ -0.3
DUSP3-201ENST00000226004 ZNF326Q5BKZ1 582 aaKnown RBP13.2□□□□□ -0.3
DUSP3-201ENST00000226004 ANP32EQ9BTT0 268 aa13.2□□□□□ -0.3
DUSP3-201ENST00000226004 ZNF777Q9ULD5 760 aaPredicted RBP13.2□□□□□ -0.3
DUSP3-201ENST00000226004 CLSPNQ9HAW4 1339 aa13.19□□□□□ -0.3
DUSP3-201ENST00000226004 CCNB3Q8WWL7 1395 aa13.19□□□□□ -0.3
DUSP3-201ENST00000226004 SUPT16HQ9Y5B9 1047 aaKnown RBP13.18□□□□□ -0.3
DUSP3-201ENST00000226004 RRP7BPQ9NSQ0 103 aa13.17□□□□□ -0.3
DUSP3-201ENST00000226004 CADPSQ9ULU8 1353 aa13.17□□□□□ -0.3
DUSP3-201ENST00000226004 UNC13AQ9UPW8 1703 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms