Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SNORA74.1-201ENST00000516320 180 ntBASIC6.3□□□□□ -1.4
MSH3P20585 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 AC116917.1-201ENST00000520558 305 ntBASIC6.3□□□□□ -1.4
MSH3P20585 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC6.3□□□□□ -1.4
MSH3P20585 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSH3P20585 AC138207.8-204ENST00000579588 527 ntBASIC6.3□□□□□ -1.4
MSH3P20585 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC6.3□□□□□ -1.4
MSH3P20585 AC233702.7-202ENST00000582941 211 ntBASIC6.3□□□□□ -1.4
MSH3P20585 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.3□□□□□ -1.4
MSH3P20585 AL008723.3-201ENST00000608926 449 ntBASIC6.3□□□□□ -1.4
MSH3P20585 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.3□□□□□ -1.4
MSH3P20585 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSH3P20585 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.3□□□□□ -1.4
MSH3P20585 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSH3P20585 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
MSH3P20585 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSH3P20585 AC105749.1-201ENST00000631338 2008 ntBASIC6.3□□□□□ -1.4
MSH3P20585 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 LINC01613-201ENST00000561476 2780 ntBASIC6.29□□□□□ -1.4
MSH3P20585 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.29□□□□□ -1.4
MSH3P20585 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
MSH3P20585 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC6.29□□□□□ -1.4
MSH3P20585 AC007159.1-201ENST00000566529 4706 ntBASIC6.29□□□□□ -1.4
MSH3P20585 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSH3P20585 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
MSH3P20585 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSH3P20585 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.29□□□□□ -1.4
MSH3P20585 AC013403.1-201ENST00000436954 263 ntBASIC6.29□□□□□ -1.4
MSH3P20585 POU5F1P5-201ENST00000445059 658 ntBASIC6.29□□□□□ -1.4
MSH3P20585 VPS25P1-201ENST00000455691 508 ntBASIC6.29□□□□□ -1.4
MSH3P20585 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSH3P20585 RN7SL643P-201ENST00000471845 291 ntBASIC6.29□□□□□ -1.4
MSH3P20585 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC6.29□□□□□ -1.4
MSH3P20585 OR9A1P-202ENST00000484361 945 ntBASIC6.29□□□□□ -1.4
MSH3P20585 RPS27P20-201ENST00000492051 246 ntBASIC6.29□□□□□ -1.4
MSH3P20585 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC6.29□□□□□ -1.4
MSH3P20585 RN7SKP248-201ENST00000516278 305 ntBASIC6.29□□□□□ -1.4
MSH3P20585 IGHV4-55-201ENST00000520889 368 ntBASIC6.29□□□□□ -1.4
MSH3P20585 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSH3P20585 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC6.29□□□□□ -1.4
MSH3P20585 AC009120.3-201ENST00000563335 499 ntBASIC6.29□□□□□ -1.4
MSH3P20585 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.29□□□□□ -1.4
MSH3P20585 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.29□□□□□ -1.4
MSH3P20585 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.29□□□□□ -1.4
MSH3P20585 RN7SL475P-201ENST00000583379 298 ntBASIC6.29□□□□□ -1.4
MSH3P20585 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.29□□□□□ -1.4
MSH3P20585 AC005332.4-201ENST00000592752 579 ntBASIC6.29□□□□□ -1.4
MSH3P20585 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC6.29□□□□□ -1.4
MSH3P20585 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSH3P20585 AC011500.1-201ENST00000601963 469 ntBASIC6.29□□□□□ -1.4
MSH3P20585 WBP1LP12-201ENST00000604449 331 ntBASIC6.29□□□□□ -1.4
MSH3P20585 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.29□□□□□ -1.4
MSH3P20585 AC024589.2-201ENST00000605642 1294 ntBASIC6.29□□□□□ -1.4
MSH3P20585 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSH3P20585 AL137246.2-201ENST00000613439 662 ntBASIC6.29□□□□□ -1.4
MSH3P20585 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.29□□□□□ -1.4
MSH3P20585 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.29□□□□□ -1.4
MSH3P20585 AC011504.1-201ENST00000623331 4103 ntBASIC6.29□□□□□ -1.4
MSH3P20585 AC018659.2-201ENST00000624690 715 ntBASIC6.29□□□□□ -1.4
MSH3P20585 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.29□□□□□ -1.4
MSH3P20585 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSH3P20585 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.29□□□□□ -1.4
MSH3P20585 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
MSH3P20585 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSH3P20585 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.29□□□□□ -1.4
MSH3P20585 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSH3P20585 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.29□□□□□ -1.4
MSH3P20585 CASC19-246ENST00000641625 1606 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 AC011369.2-201ENST00000624423 1567 ntBASIC6.28□□□□□ -1.4
MSH3P20585 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSH3P20585 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
MSH3P20585 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.28□□□□□ -1.4
MSH3P20585 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
MSH3P20585 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
MSH3P20585 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC6.28□□□□□ -1.4
MSH3P20585 RNA5SP251-201ENST00000410614 137 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.28□□□□□ -1.4
MSH3P20585 DHFRP2-201ENST00000414224 547 ntBASIC6.28□□□□□ -1.4
MSH3P20585 UBE2V1P14-201ENST00000415815 558 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
MSH3P20585 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.28□□□□□ -1.4
MSH3P20585 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.28□□□□□ -1.4
MSH3P20585 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.28□□□□□ -1.4
MSH3P20585 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC6.28□□□□□ -1.4
MSH3P20585 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.28□□□□□ -1.4
MSH3P20585 TPTE2P1-204ENST00000435256 593 ntBASIC6.28□□□□□ -1.4
MSH3P20585 ARMC4P1-201ENST00000438905 707 ntBASIC6.28□□□□□ -1.4
MSH3P20585 AC097359.1-201ENST00000447946 463 ntBASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 384 ms