Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 MORF4L1P5-201ENST00000433352 961 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC7.31□□□□□ -1.24
SCN4AP35499 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC7.31□□□□□ -1.24
SCN4AP35499 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 RPSAP73-201ENST00000614820 330 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC7.31□□□□□ -1.24
SCN4AP35499 ARHGAP19-202ENST00000358531 5463 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
SCN4AP35499 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC7.31□□□□□ -1.24
SCN4AP35499 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 AC092017.2-201ENST00000427600 362 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC7.31□□□□□ -1.24
SCN4AP35499 Z84478.1-201ENST00000438230 1219 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC7.31□□□□□ -1.24
SCN4AP35499 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC7.31□□□□□ -1.24
SCN4AP35499 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC7.31□□□□□ -1.24
SCN4AP35499 RN7SL269P-201ENST00000467795 305 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 AC105420.1-201ENST00000504389 582 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC7.31□□□□□ -1.24
SCN4AP35499 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC7.31□□□□□ -1.24
SCN4AP35499 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC7.31□□□□□ -1.24
SCN4AP35499 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC7.31□□□□□ -1.24
SCN4AP35499 HOTTIP_3.1-201ENST00000619957 337 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 AC010624.4-201ENST00000597606 1351 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 AP003119.3-201ENST00000566747 4192 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC7.31□□□□□ -1.24
SCN4AP35499 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
SCN4AP35499 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 AL355377.1-201ENST00000621125 1653 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC7.31□□□□□ -1.24
SCN4AP35499 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC7.31□□□□□ -1.24
SCN4AP35499 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC7.31□□□□□ -1.24
SCN4AP35499 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
SCN4AP35499 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 AC119674.1-204ENST00000641348 1343 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 RNA5SP394-201ENST00000364216 119 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 RNU1-24P-201ENST00000364285 165 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC7.3□□□□□ -1.24
SCN4AP35499 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC7.3□□□□□ -1.24
SCN4AP35499 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC7.3□□□□□ -1.24
SCN4AP35499 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 AC245047.1-201ENST00000433276 873 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 RPS12P17-201ENST00000438591 377 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC7.3□□□□□ -1.24
SCN4AP35499 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC7.3□□□□□ -1.24
SCN4AP35499 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC7.3□□□□□ -1.24
SCN4AP35499 RN7SL222P-201ENST00000476452 299 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 OR2AO1P-201ENST00000476497 403 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 AC109481.1-201ENST00000509173 282 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC7.3□□□□□ -1.24
SCN4AP35499 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC7.3□□□□□ -1.24
SCN4AP35499 IGLV3-6-201ENST00000523937 250 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC7.3□□□□□ -1.24
SCN4AP35499 Mico1.1-201ENST00000611698 204 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC7.3□□□□□ -1.24
SCN4AP35499 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC7.3□□□□□ -1.24
SCN4AP35499 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC7.3□□□□□ -1.24
SCN4AP35499 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC7.3□□□□□ -1.24
SCN4AP35499 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC7.3□□□□□ -1.24
SCN4AP35499 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 AC062022.1-201ENST00000451026 1684 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 AC007485.2-201ENST00000623493 1667 ntBASIC7.3□□□□□ -1.24
SCN4AP35499 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SCN4AP35499 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SCN4AP35499 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms