RNA–Protein interactions for RNA: ENST00000342084.8

PTPRR-202, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRR, Length 2,037 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-202ENST00000342084 NISCHQ9Y2I1 1504 aa15.01□□□□□ -0.01
PTPRR-202ENST00000342084 SHROOM4Q9ULL8 1493 aa12.98□□□□□ -0.33
PTPRR-202ENST00000342084 CCDC180Q9P1Z9 1646 aa12.96□□□□□ -0.33
PTPRR-202ENST00000342084 SUPT5HO00267 1087 aaKnown RBP12.71□□□□□ -0.38
PTPRR-202ENST00000342084 ZCCHC6Q5VYS8 1495 aaKnown RBP12.7□□□□□ -0.38
PTPRR-202ENST00000342084 DCAF8L2P0C7V8 631 aa12.54□□□□□ -0.4
PTPRR-202ENST00000342084 CHIC1Q5VXU3 224 aa12.54□□□□□ -0.4
PTPRR-202ENST00000342084 DCAF1Q9Y4B6 1507 aa12.42□□□□□ -0.42
PTPRR-202ENST00000342084 MYO15BQ96JP2 1530 aa12.35□□□□□ -0.43
PTPRR-202ENST00000342084 AEBP2Q6ZN18 517 aaPredicted RBP12.04□□□□□ -0.48
PTPRR-202ENST00000342084 SCRIBQ14160 1630 aa12.02□□□□□ -0.48
PTPRR-202ENST00000342084 LOC105371045A0A1W2PR82 267 aa12.02□□□□□ -0.49
PTPRR-202ENST00000342084 PCGF6Q9BYE7 350 aa12.02□□□□□ -0.49
PTPRR-202ENST00000342084 ABCC9O60706 1549 aa12□□□□□ -0.49
PTPRR-202ENST00000342084 HRCP23327 699 aa11.99□□□□□ -0.49
PTPRR-202ENST00000342084 NACADO15069 1562 aa11.97□□□□□ -0.49
PTPRR-202ENST00000342084 RSF1Q96T23 1441 aaPredicted RBP11.91□□□□□ -0.5
PTPRR-202ENST00000342084 PPARGC1BQ86YN6 1023 aaKnown RBP11.86□□□□□ -0.51
PTPRR-202ENST00000342084 RB1CC1Q8TDY2 1594 aa11.85□□□□□ -0.51
PTPRR-202ENST00000342084 FAM9AQ8IZU1 332 aaPredicted RBP11.77□□□□□ -0.52
PTPRR-202ENST00000342084 CECR2Q9BXF3 1484 aa11.77□□□□□ -0.53
PTPRR-202ENST00000342084 TRIM41Q8WV44 630 aa11.76□□□□□ -0.53
PTPRR-202ENST00000342084 EHMT2Q96KQ7 1210 aa11.75□□□□□ -0.53
PTPRR-202ENST00000342084 MROH2BQ7Z745 1585 aa11.71□□□□□ -0.53
PTPRR-202ENST00000342084 TRIM26Q12899 539 aaPredicted RBP11.7□□□□□ -0.54
PTPRR-202ENST00000342084 WIZO95785 1651 aa11.67□□□□□ -0.54
PTPRR-202ENST00000342084 UNC13AQ9UPW8 1703 aa11.62□□□□□ -0.55
PTPRR-202ENST00000342084 BAZ1AQ9NRL2 1556 aaPredicted RBP11.55□□□□□ -0.56
PTPRR-202ENST00000342084 EIF4G1Q04637 1599 aaKnown RBP11.5□□□□□ -0.57
PTPRR-202ENST00000342084 SMARCA4P51532 1647 aa11.49□□□□□ -0.57
PTPRR-202ENST00000342084 BICRAQ9NZM4 1560 aa11.48□□□□□ -0.57
PTPRR-202ENST00000342084 ABCC8Q09428 1581 aa11.45□□□□□ -0.58
PTPRR-202ENST00000342084 TOP2AP11388 1531 aaKnown RBP11.43□□□□□ -0.58
PTPRR-202ENST00000342084 CCDC88BA6NC98 1476 aa11.41□□□□□ -0.58
PTPRR-202ENST00000342084 SMARCA2P51531 1590 aa11.39□□□□□ -0.59
PTPRR-202ENST00000342084 ZEB1P37275 1124 aaPredicted RBP11.39□□□□□ -0.59
PTPRR-202ENST00000342084 TTBK1Q5TCY1 1321 aaPredicted RBP11.37□□□□□ -0.59
PTPRR-202ENST00000342084 PABPN1Q86U42 306 aaKnown RBP eCLIP11.37□□□□□ -0.59
PTPRR-202ENST00000342084 PEG3Q9GZU2 1588 aa11.35□□□□□ -0.59
PTPRR-202ENST00000342084 SOGA1O94964 1423 aa11.33□□□□□ -0.6
PTPRR-202ENST00000342084 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.31□□□□□ -0.6
PTPRR-202ENST00000342084 RUSC2Q8N2Y8 1516 aa11.3□□□□□ -0.6
PTPRR-202ENST00000342084 PHF23Q9BUL5 403 aaPredicted RBP11.28□□□□□ -0.6
PTPRR-202ENST00000342084 CEP162Q5TB80 1403 aa11.27□□□□□ -0.61
PTPRR-202ENST00000342084 CCER1Q8TC90 406 aaPredicted RBP11.25□□□□□ -0.61
PTPRR-202ENST00000342084 UBTFP17480 764 aaKnown RBP11.21□□□□□ -0.61
PTPRR-202ENST00000342084 CSRNP3Q8WYN3 585 aa11.21□□□□□ -0.61
PTPRR-202ENST00000342084 ATAD2BQ9ULI0 1458 aa11.21□□□□□ -0.62
PTPRR-202ENST00000342084 WRNQ14191 1432 aaPredicted RBP eCLIP11.2□□□□□ -0.62
PTPRR-202ENST00000342084 TNIKQ9UKE5 1360 aa11.19□□□□□ -0.62
PTPRR-202ENST00000342084 SYNJ1O43426 1573 aa11.17□□□□□ -0.62
PTPRR-202ENST00000342084 EEA1Q15075 1411 aa11.15□□□□□ -0.62
PTPRR-202ENST00000342084 GOLGA3Q08378 1498 aa11.15□□□□□ -0.63
PTPRR-202ENST00000342084 BAZ1BQ9UIG0 1483 aaKnown RBP11.14□□□□□ -0.63
PTPRR-202ENST00000342084 SCAF1Q9H7N4 1312 aaKnown RBP11.13□□□□□ -0.63
PTPRR-202ENST00000342084 RANGAP1P46060 587 aaPredicted RBP11.09□□□□□ -0.63
PTPRR-202ENST00000342084 HMGXB3Q12766 1538 aa11.08□□□□□ -0.64
PTPRR-202ENST00000342084 CEP164Q9UPV0 1460 aa11.06□□□□□ -0.64
PTPRR-202ENST00000342084 NCAPD3P42695 1498 aa11.05□□□□□ -0.64
PTPRR-202ENST00000342084 RAPGEF2Q9Y4G8 1499 aa11.05□□□□□ -0.64
PTPRR-202ENST00000342084 KIF21BO75037 1637 aa11.05□□□□□ -0.64
PTPRR-202ENST00000342084 CLIP1P30622 1438 aa11.04□□□□□ -0.64
PTPRR-202ENST00000342084 HNRNPUL2Q1KMD3 747 aaKnown RBP11.04□□□□□ -0.64
PTPRR-202ENST00000342084 DIEXFQ68CQ4 756 aaKnown RBP11.03□□□□□ -0.64
PTPRR-202ENST00000342084 NEUROD1Q13562 356 aa10.99□□□□□ -0.65
PTPRR-202ENST00000342084 VPS8Q8N3P4 1428 aa10.98□□□□□ -0.65
PTPRR-202ENST00000342084 TOP2BQ02880 1626 aa10.97□□□□□ -0.65
PTPRR-202ENST00000342084 ACIN1Q9UKV3 1341 aaKnown RBP10.96□□□□□ -0.65
PTPRR-202ENST00000342084 BIVM-ERCC5R4GMW8 1640 aa10.94□□□□□ -0.66
PTPRR-202ENST00000342084 ZNF316A6NFI3 1004 aaPredicted RBP10.92□□□□□ -0.66
PTPRR-202ENST00000342084 APLP2Q06481 763 aa10.92□□□□□ -0.66
PTPRR-202ENST00000342084 SLC24A1O60721 1099 aa10.92□□□□□ -0.66
PTPRR-202ENST00000342084 CFTRP13569 1480 aa10.9□□□□□ -0.67
PTPRR-202ENST00000342084 CUX1P39880 1505 aa10.89□□□□□ -0.67
PTPRR-202ENST00000342084 PRDM2Q13029 1718 aa10.89□□□□□ -0.67
PTPRR-202ENST00000342084 ARAP1Q96P48 1450 aa10.88□□□□□ -0.67
PTPRR-202ENST00000342084 PRXQ9BXM0 1461 aa10.87□□□□□ -0.67
PTPRR-202ENST00000342084 YTHDC1Q96MU7 727 aaKnown RBP10.87□□□□□ -0.67
PTPRR-202ENST00000342084 GTF3C3Q9Y5Q9 886 aa10.87□□□□□ -0.67
PTPRR-202ENST00000342084 KANK4Q5T7N3 995 aaPredicted RBP10.85□□□□□ -0.67
PTPRR-202ENST00000342084 ERICH3Q5RHP9 1530 aa10.84□□□□□ -0.67
PTPRR-202ENST00000342084 CENPBP07199 599 aaPredicted RBP10.84□□□□□ -0.67
PTPRR-202ENST00000342084 CC2D2AQ9P2K1 1620 aa10.84□□□□□ -0.67
PTPRR-202ENST00000342084 MIER1Q8N108 512 aa10.82□□□□□ -0.68
PTPRR-202ENST00000342084 KIF27Q86VH2 1401 aa10.81□□□□□ -0.68
PTPRR-202ENST00000342084 DHX57Q6P158 1386 aaKnown RBP10.77□□□□□ -0.69
PTPRR-202ENST00000342084 CADPSQ9ULU8 1353 aa10.77□□□□□ -0.69
PTPRR-202ENST00000342084 ARHGAP35Q9NRY4 1499 aa10.77□□□□□ -0.69
PTPRR-202ENST00000342084 PELP1Q8IZL8 1130 aaKnown RBP10.76□□□□□ -0.69
PTPRR-202ENST00000342084 ITGAEP38570 1179 aa10.75□□□□□ -0.69
PTPRR-202ENST00000342084 CUX2O14529 1486 aa10.74□□□□□ -0.69
PTPRR-202ENST00000342084 RRBP1Q9P2E9 1410 aaKnown RBP10.71□□□□□ -0.7
PTPRR-202ENST00000342084 IGF1RP08069 1367 aa10.7□□□□□ -0.7
PTPRR-202ENST00000342084 FGD5Q6ZNL6 1462 aa10.69□□□□□ -0.7
PTPRR-202ENST00000342084 CCNB3Q8WWL7 1395 aa10.69□□□□□ -0.7
PTPRR-202ENST00000342084 P3H3Q8IVL6 736 aa10.67□□□□□ -0.7
PTPRR-202ENST00000342084 FANCD2Q9BXW9 1451 aa10.66□□□□□ -0.7
PTPRR-202ENST00000342084 CARMIL1Q5VZK9 1371 aa10.66□□□□□ -0.7
PTPRR-202ENST00000342084 DNMBPQ6XZF7 1577 aa10.65□□□□□ -0.7
PTPRR-202ENST00000342084 TIAM1Q13009 1591 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms