RNA–Protein interactions for RNA: ENST00000447267.4

SDCBP-205, Transcript of syndecan binding protein, humanhuman

TSL 3 BASIC

Gene SDCBP, Length 772 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-205ENST00000447267 AEBP2Q6ZN18 517 aaPredicted RBP23.05■■□□□ 1.28
SDCBP-205ENST00000447267 CHIC1Q5VXU3 224 aa21.96■■□□□ 1.11
SDCBP-205ENST00000447267 SENP3Q9H4L4 574 aaPredicted RBP19.43■□□□□ 0.7
SDCBP-205ENST00000447267 PHF23Q9BUL5 403 aaPredicted RBP19.37■□□□□ 0.69
SDCBP-205ENST00000447267 FOXD1Q16676 465 aa18.22■□□□□ 0.51
SDCBP-205ENST00000447267 PLPPR3Q6T4P5 718 aa17.54■□□□□ 0.4
SDCBP-205ENST00000447267 PPP6R1Q9UPN7 881 aa17.24■□□□□ 0.35
SDCBP-205ENST00000447267 ADRA2BP18089 450 aa17.16■□□□□ 0.34
SDCBP-205ENST00000447267 PIAS4Q8N2W9 510 aaPredicted RBP16.98■□□□□ 0.31
SDCBP-205ENST00000447267 MSH5O43196 834 aa16.8■□□□□ 0.28
SDCBP-205ENST00000447267 POTEDQ86YR6 584 aa16.21■□□□□ 0.19
SDCBP-205ENST00000447267 MAPK8IP2Q13387 824 aaPredicted RBP15.73■□□□□ 0.11
SDCBP-205ENST00000447267 DMRT2Q9Y5R5 561 aa15.5■□□□□ 0.07
SDCBP-205ENST00000447267 SCAF1Q9H7N4 1312 aaKnown RBP15.47■□□□□ 0.07
SDCBP-205ENST00000447267 PPP4R3CPQ6ZMV5 832 aa15.47■□□□□ 0.07
SDCBP-205ENST00000447267 CNKSR2Q8WXI2 1034 aa15.08■□□□□ 0
SDCBP-205ENST00000447267 HOXD11P31277 338 aaPredicted RBP15.02■□□□□ -0
SDCBP-205ENST00000447267 RNF216Q9NWF9 866 aaPredicted RBP14.91□□□□□ -0.02
SDCBP-205ENST00000447267 NCBP3Q53F19 620 aaKnown RBP14.79□□□□□ -0.04
SDCBP-205ENST00000447267 DCAF8L1A6NGE4 600 aa14.78□□□□□ -0.04
SDCBP-205ENST00000447267 NPM3O75607 178 aaKnown RBP14.75□□□□□ -0.05
SDCBP-205ENST00000447267 KCNA4P22459 653 aa14.67□□□□□ -0.06
SDCBP-205ENST00000447267 RNF39Q9H2S5 420 aa14.46□□□□□ -0.09
SDCBP-205ENST00000447267 DNAJC5BQ9UF47 199 aa14.36□□□□□ -0.11
SDCBP-205ENST00000447267 CACNB1Q02641 598 aaPredicted RBP14.33□□□□□ -0.12
SDCBP-205ENST00000447267 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.22□□□□□ -0.13
SDCBP-205ENST00000447267 C1QBPQ07021 282 aaKnown RBP14.18□□□□□ -0.14
SDCBP-205ENST00000447267 SLC4A2P04920 1241 aa14.1□□□□□ -0.15
SDCBP-205ENST00000447267 U3KPZ7 1027 aaPredicted RBP14.07□□□□□ -0.16
SDCBP-205ENST00000447267 SPINK5Q9NQ38 1064 aaPredicted RBP13.83□□□□□ -0.2
SDCBP-205ENST00000447267 SLC4A1APQ9BWU0 796 aaKnown RBP13.8□□□□□ -0.2
SDCBP-205ENST00000447267 CAPN15O75808 1086 aa13.66□□□□□ -0.22
SDCBP-205ENST00000447267 DSG3P32926 999 aa13.62□□□□□ -0.23
SDCBP-205ENST00000447267 ZBTB22O15209 634 aa13.58□□□□□ -0.24
SDCBP-205ENST00000447267 MYCNP04198 464 aaPredicted RBP13.55□□□□□ -0.24
SDCBP-205ENST00000447267 FOXD4L1Q9NU39 408 aa13.54□□□□□ -0.24
SDCBP-205ENST00000447267 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.51□□□□□ -0.25
SDCBP-205ENST00000447267 TRHP20396 242 aaPredicted RBP13.51□□□□□ -0.25
SDCBP-205ENST00000447267 HNRNPUL2Q1KMD3 747 aaKnown RBP13.51□□□□□ -0.25
SDCBP-205ENST00000447267 SAMD1Q6SPF0 538 aaPredicted RBP13.5□□□□□ -0.25
SDCBP-205ENST00000447267 ABCC9O60706 1549 aa13.49□□□□□ -0.25
SDCBP-205ENST00000447267 ABCB7O75027 752 aa13.45□□□□□ -0.26
SDCBP-205ENST00000447267 APLP2Q06481 763 aa13.43□□□□□ -0.26
SDCBP-205ENST00000447267 ZNF219Q9P2Y4 722 aaPredicted RBP13.42□□□□□ -0.26
SDCBP-205ENST00000447267 ATF5Q9Y2D1 282 aaPredicted RBP13.39□□□□□ -0.27
SDCBP-205ENST00000447267 DNAJC5Q9H3Z4 198 aa13.31□□□□□ -0.28
SDCBP-205ENST00000447267 POLA2Q14181 598 aa13.22□□□□□ -0.29
SDCBP-205ENST00000447267 NISCHQ9Y2I1 1504 aa13.2□□□□□ -0.3
SDCBP-205ENST00000447267 CSRNP3Q8WYN3 585 aa13.07□□□□□ -0.32
SDCBP-205ENST00000447267 ATXN8OSP0DMR3 200 aa13.05□□□□□ -0.32
SDCBP-205ENST00000447267 EHMT2Q96KQ7 1210 aa12.95□□□□□ -0.34
SDCBP-205ENST00000447267 RBM42Q9BTD8 480 aaKnown RBP12.83□□□□□ -0.36
SDCBP-205ENST00000447267 ZBTB12Q9Y330 459 aaPredicted RBP12.83□□□□□ -0.36
SDCBP-205ENST00000447267 OSCARQ8IYS5 282 aa12.82□□□□□ -0.36
SDCBP-205ENST00000447267 MKRN4PQ13434 485 aaPredicted RBP12.78□□□□□ -0.36
SDCBP-205ENST00000447267 POTEHQ6S545 545 aa12.69□□□□□ -0.38
SDCBP-205ENST00000447267 AKT1S1Q96B36 256 aa12.64□□□□□ -0.39
SDCBP-205ENST00000447267 FBLN2P98095 1184 aa12.61□□□□□ -0.39
SDCBP-205ENST00000447267 REM2Q8IYK8 340 aaPredicted RBP12.59□□□□□ -0.39
SDCBP-205ENST00000447267 CHRDL2Q6WN34 429 aa12.58□□□□□ -0.4
SDCBP-205ENST00000447267 PABPN1Q86U42 306 aaKnown RBP eCLIP12.54□□□□□ -0.4
SDCBP-205ENST00000447267 SPDYE2BA6NHP3 402 aa12.52□□□□□ -0.41
SDCBP-205ENST00000447267 SPDYE6P0CI01 402 aa12.52□□□□□ -0.41
SDCBP-205ENST00000447267 SPDYE2Q495Y8 402 aa12.52□□□□□ -0.41
SDCBP-205ENST00000447267 PITPNM1O00562 1244 aa12.48□□□□□ -0.41
SDCBP-205ENST00000447267 SSUH2Q9Y2M2 353 aa12.46□□□□□ -0.41
SDCBP-205ENST00000447267 ZNF692Q9BU19 519 aaPredicted RBP12.41□□□□□ -0.42
SDCBP-205ENST00000447267 TRIM41Q8WV44 630 aa12.4□□□□□ -0.42
SDCBP-205ENST00000447267 PIP4P2Q8N4L2 257 aa12.37□□□□□ -0.43
SDCBP-205ENST00000447267 FXR2P51116 673 aaKnown RBP eCLIP12.31□□□□□ -0.44
SDCBP-205ENST00000447267 SPDYE1Q8NFV5 336 aaPredicted RBP12.23□□□□□ -0.45
SDCBP-205ENST00000447267 CLEC11AQ9Y240 323 aa12.23□□□□□ -0.45
SDCBP-205ENST00000447267 CECR2Q9BXF3 1484 aa12.21□□□□□ -0.46
SDCBP-205ENST00000447267 RB1CC1Q8TDY2 1594 aa12.14□□□□□ -0.47
SDCBP-205ENST00000447267 SPDYE4A6NLX3 237 aa12.14□□□□□ -0.47
SDCBP-205ENST00000447267 PRKAR2AP13861 404 aaKnown RBP12.12□□□□□ -0.47
SDCBP-205ENST00000447267 CHADLQ6NUI6 762 aa12.09□□□□□ -0.47
SDCBP-205ENST00000447267 CCDC180Q9P1Z9 1646 aa12.08□□□□□ -0.48
SDCBP-205ENST00000447267 EVX2Q03828 476 aa12.07□□□□□ -0.48
SDCBP-205ENST00000447267 PRR29P0C7W0 189 aa12.03□□□□□ -0.48
SDCBP-205ENST00000447267 HAX1O00165 279 aa12.01□□□□□ -0.49
SDCBP-205ENST00000447267 CC2D2AQ9P2K1 1620 aa11.99□□□□□ -0.49
SDCBP-205ENST00000447267 SP7Q8TDD2 431 aaPredicted RBP11.98□□□□□ -0.49
SDCBP-205ENST00000447267 PROM2Q8N271 834 aa11.97□□□□□ -0.49
SDCBP-205ENST00000447267 DCAF8L2P0C7V8 631 aa11.95□□□□□ -0.5
SDCBP-205ENST00000447267 C19orf67A6NJJ6 358 aa11.92□□□□□ -0.5
SDCBP-205ENST00000447267 CREBZFQ9NS37 354 aa11.9□□□□□ -0.5
SDCBP-205ENST00000447267 BICRAQ9NZM4 1560 aa11.9□□□□□ -0.5
SDCBP-205ENST00000447267 CUX2O14529 1486 aa11.89□□□□□ -0.51
SDCBP-205ENST00000447267 STAG3Q9UJ98 1225 aa11.86□□□□□ -0.51
SDCBP-205ENST00000447267 FARP1Q9Y4F1 1045 aaPredicted RBP11.86□□□□□ -0.51
SDCBP-205ENST00000447267 NACADO15069 1562 aa11.79□□□□□ -0.52
SDCBP-205ENST00000447267 MNX1P50219 401 aaPredicted RBP11.77□□□□□ -0.53
SDCBP-205ENST00000447267 UNC13AQ9UPW8 1703 aa11.77□□□□□ -0.53
SDCBP-205ENST00000447267 FKBP8Q14318 412 aa11.76□□□□□ -0.53
SDCBP-205ENST00000447267 CD44P16070 742 aaKnown RBP11.73□□□□□ -0.53
SDCBP-205ENST00000447267 GABBR2O75899 941 aa11.69□□□□□ -0.54
SDCBP-205ENST00000447267 EIF4G1Q04637 1599 aaKnown RBP11.68□□□□□ -0.54
SDCBP-205ENST00000447267 ILDR1Q86SU0 546 aaPredicted RBP11.66□□□□□ -0.54
SDCBP-205ENST00000447267 ERCC6Q03468 1493 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms