RNA–Protein interactions for RNA: ENST00000423442.6

LINC00458-201, long intergenic non-protein coding RNA 458, humanhuman

TSL 1 (best) BASIC

Gene LINC00458, Length 1,060 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-201ENST00000423442 AEBP2Q6ZN18 517 aaPredicted RBP30.62■■■□□ 2.49
LINC00458-201ENST00000423442 CHIC1Q5VXU3 224 aa28.94■■■□□ 2.22
LINC00458-201ENST00000423442 SENP3Q9H4L4 574 aaPredicted RBP26.16■■□□□ 1.78
LINC00458-201ENST00000423442 PHF23Q9BUL5 403 aaPredicted RBP25.79■■□□□ 1.72
LINC00458-201ENST00000423442 FOXD1Q16676 465 aa24.4■■□□□ 1.5
LINC00458-201ENST00000423442 PLPPR3Q6T4P5 718 aa23.1■■□□□ 1.29
LINC00458-201ENST00000423442 MSH5O43196 834 aa22.92■■□□□ 1.26
LINC00458-201ENST00000423442 PIAS4Q8N2W9 510 aaPredicted RBP22.73■■□□□ 1.23
LINC00458-201ENST00000423442 POTEDQ86YR6 584 aa22.72■■□□□ 1.23
LINC00458-201ENST00000423442 PPP6R1Q9UPN7 881 aa22.72■■□□□ 1.23
LINC00458-201ENST00000423442 ADRA2BP18089 450 aa22.64■■□□□ 1.21
LINC00458-201ENST00000423442 MAPK8IP2Q13387 824 aaPredicted RBP20.82■□□□□ 0.92
LINC00458-201ENST00000423442 DMRT2Q9Y5R5 561 aa20.72■□□□□ 0.91
LINC00458-201ENST00000423442 SCAF1Q9H7N4 1312 aaKnown RBP20.67■□□□□ 0.9
LINC00458-201ENST00000423442 PPP4R3CPQ6ZMV5 832 aa20.29■□□□□ 0.84
LINC00458-201ENST00000423442 HOXD11P31277 338 aaPredicted RBP19.88■□□□□ 0.77
LINC00458-201ENST00000423442 CNKSR2Q8WXI2 1034 aa19.87■□□□□ 0.77
LINC00458-201ENST00000423442 DCAF8L1A6NGE4 600 aa19.83■□□□□ 0.77
LINC00458-201ENST00000423442 CACNB1Q02641 598 aaPredicted RBP19.78■□□□□ 0.76
LINC00458-201ENST00000423442 RNF216Q9NWF9 866 aaPredicted RBP19.69■□□□□ 0.74
LINC00458-201ENST00000423442 RNF39Q9H2S5 420 aa19.55■□□□□ 0.72
LINC00458-201ENST00000423442 NCBP3Q53F19 620 aaKnown RBP19.46■□□□□ 0.71
LINC00458-201ENST00000423442 DNAJC5BQ9UF47 199 aa19.27■□□□□ 0.68
LINC00458-201ENST00000423442 C1QBPQ07021 282 aaKnown RBP19.26■□□□□ 0.67
LINC00458-201ENST00000423442 NPM3O75607 178 aaKnown RBP19.24■□□□□ 0.67
LINC00458-201ENST00000423442 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.93■□□□□ 0.62
LINC00458-201ENST00000423442 KCNA4P22459 653 aa18.91■□□□□ 0.62
LINC00458-201ENST00000423442 U3KPZ7 1027 aaPredicted RBP18.54■□□□□ 0.56
LINC00458-201ENST00000423442 SLC4A2P04920 1241 aa18.39■□□□□ 0.53
LINC00458-201ENST00000423442 SPINK5Q9NQ38 1064 aaPredicted RBP18.3■□□□□ 0.52
LINC00458-201ENST00000423442 CAPN15O75808 1086 aa18.25■□□□□ 0.51
LINC00458-201ENST00000423442 DSG3P32926 999 aa18.22■□□□□ 0.51
LINC00458-201ENST00000423442 TRHP20396 242 aaPredicted RBP17.97■□□□□ 0.47
LINC00458-201ENST00000423442 APLP2Q06481 763 aa17.97■□□□□ 0.47
LINC00458-201ENST00000423442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.93■□□□□ 0.46
LINC00458-201ENST00000423442 HNRNPUL2Q1KMD3 747 aaKnown RBP17.93■□□□□ 0.46
LINC00458-201ENST00000423442 ZNF219Q9P2Y4 722 aaPredicted RBP17.89■□□□□ 0.45
LINC00458-201ENST00000423442 ABCB7O75027 752 aa17.86■□□□□ 0.45
LINC00458-201ENST00000423442 SAMD1Q6SPF0 538 aaPredicted RBP17.85■□□□□ 0.45
LINC00458-201ENST00000423442 SLC4A1APQ9BWU0 796 aaKnown RBP17.82■□□□□ 0.44
LINC00458-201ENST00000423442 POTEHQ6S545 545 aa17.76■□□□□ 0.43
LINC00458-201ENST00000423442 MYCNP04198 464 aaPredicted RBP17.75■□□□□ 0.43
LINC00458-201ENST00000423442 FOXD4L1Q9NU39 408 aa17.59■□□□□ 0.41
LINC00458-201ENST00000423442 POLA2Q14181 598 aa17.48■□□□□ 0.39
LINC00458-201ENST00000423442 ATF5Q9Y2D1 282 aaPredicted RBP17.44■□□□□ 0.38
LINC00458-201ENST00000423442 ZBTB22O15209 634 aa17.41■□□□□ 0.38
LINC00458-201ENST00000423442 RBM42Q9BTD8 480 aaKnown RBP17.39■□□□□ 0.37
LINC00458-201ENST00000423442 CHRDL2Q6WN34 429 aa17.09■□□□□ 0.33
LINC00458-201ENST00000423442 ZBTB12Q9Y330 459 aaPredicted RBP17.05■□□□□ 0.32
LINC00458-201ENST00000423442 ATXN8OSP0DMR3 200 aa17.01■□□□□ 0.31
LINC00458-201ENST00000423442 AKT1S1Q96B36 256 aa16.96■□□□□ 0.31
LINC00458-201ENST00000423442 OSCARQ8IYS5 282 aa16.93■□□□□ 0.3
LINC00458-201ENST00000423442 REM2Q8IYK8 340 aaPredicted RBP16.8■□□□□ 0.28
LINC00458-201ENST00000423442 FBLN2P98095 1184 aa16.66■□□□□ 0.26
LINC00458-201ENST00000423442 PIP4P2Q8N4L2 257 aa16.64■□□□□ 0.25
LINC00458-201ENST00000423442 PITPNM1O00562 1244 aa16.61■□□□□ 0.25
LINC00458-201ENST00000423442 MKRN4PQ13434 485 aaPredicted RBP16.61■□□□□ 0.25
LINC00458-201ENST00000423442 CSRNP3Q8WYN3 585 aa16.59■□□□□ 0.25
LINC00458-201ENST00000423442 SP7Q8TDD2 431 aaPredicted RBP16.55■□□□□ 0.24
LINC00458-201ENST00000423442 SPDYE2BA6NHP3 402 aa16.54■□□□□ 0.24
LINC00458-201ENST00000423442 SPDYE6P0CI01 402 aa16.54■□□□□ 0.24
LINC00458-201ENST00000423442 SPDYE2Q495Y8 402 aa16.54■□□□□ 0.24
LINC00458-201ENST00000423442 FXR2P51116 673 aaKnown RBP eCLIP16.52■□□□□ 0.24
LINC00458-201ENST00000423442 EHMT2Q96KQ7 1210 aa16.42■□□□□ 0.22
LINC00458-201ENST00000423442 HAX1O00165 279 aa16.39■□□□□ 0.21
LINC00458-201ENST00000423442 ZNF692Q9BU19 519 aaPredicted RBP16.39■□□□□ 0.21
LINC00458-201ENST00000423442 SSUH2Q9Y2M2 353 aa16.34■□□□□ 0.21
LINC00458-201ENST00000423442 CLEC11AQ9Y240 323 aa16.29■□□□□ 0.2
LINC00458-201ENST00000423442 SPDYE1Q8NFV5 336 aaPredicted RBP16.26■□□□□ 0.19
LINC00458-201ENST00000423442 EVX2Q03828 476 aa16.19■□□□□ 0.18
LINC00458-201ENST00000423442 PRKAR2AP13861 404 aaKnown RBP16.17■□□□□ 0.18
LINC00458-201ENST00000423442 PABPN1Q86U42 306 aaKnown RBP eCLIP16.16■□□□□ 0.18
LINC00458-201ENST00000423442 C19orf67A6NJJ6 358 aa16■□□□□ 0.15
LINC00458-201ENST00000423442 CHADLQ6NUI6 762 aa16■□□□□ 0.15
LINC00458-201ENST00000423442 PRR29P0C7W0 189 aa15.99■□□□□ 0.15
LINC00458-201ENST00000423442 GABBR2O75899 941 aa15.81■□□□□ 0.12
LINC00458-201ENST00000423442 SPDYE4A6NLX3 237 aa15.8■□□□□ 0.12
LINC00458-201ENST00000423442 FARP1Q9Y4F1 1045 aaPredicted RBP15.72■□□□□ 0.11
LINC00458-201ENST00000423442 CD44P16070 742 aaKnown RBP15.64■□□□□ 0.09
LINC00458-201ENST00000423442 STAG3Q9UJ98 1225 aa15.64■□□□□ 0.09
LINC00458-201ENST00000423442 CREBZFQ9NS37 354 aa15.61■□□□□ 0.09
LINC00458-201ENST00000423442 LHX8Q68G74 356 aa15.53■□□□□ 0.08
LINC00458-201ENST00000423442 CLCN6P51797 869 aa15.52■□□□□ 0.08
LINC00458-201ENST00000423442 POTEIP0CG38 1075 aa15.48■□□□□ 0.07
LINC00458-201ENST00000423442 ZNF579Q8NAF0 562 aaKnown RBP15.41■□□□□ 0.06
LINC00458-201ENST00000423442 ZRANB1Q9UGI0 708 aa15.41■□□□□ 0.06
LINC00458-201ENST00000423442 PROM2Q8N271 834 aa15.39■□□□□ 0.05
LINC00458-201ENST00000423442 MNX1P50219 401 aaPredicted RBP15.35■□□□□ 0.05
LINC00458-201ENST00000423442 DCBLD2Q96PD2 775 aa15.33■□□□□ 0.04
LINC00458-201ENST00000423442 NPM1P06748 294 aaKnown RBP eCLIP15.28■□□□□ 0.04
LINC00458-201ENST00000423442 PAK3O75914 559 aaPredicted RBP15.24■□□□□ 0.03
LINC00458-201ENST00000423442 PHF12Q96QT6 1004 aa15.23■□□□□ 0.03
LINC00458-201ENST00000423442 GALR2O43603 387 aaPredicted RBP15.22■□□□□ 0.03
LINC00458-201ENST00000423442 MIER1Q8N108 512 aa15.08■□□□□ 0
LINC00458-201ENST00000423442 TSPYL2Q9H2G4 693 aaPredicted RBP15.07■□□□□ 0
LINC00458-201ENST00000423442 FKBP8Q14318 412 aa15.05■□□□□ -0
LINC00458-201ENST00000423442 MS4A3Q96HJ5 214 aa15.01□□□□□ -0.01
LINC00458-201ENST00000423442 PLEKHG5O94827 1062 aa15□□□□□ -0.01
LINC00458-201ENST00000423442 CCDC61Q9Y6R9 512 aa14.97□□□□□ -0.01
LINC00458-201ENST00000423442 POTEB2H3BUK9 544 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms