Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 AC092364.2-202ENST00000597012 1073 ntBASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 AL353801.3-201ENST00000609898 542 ntBASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.24■□□□□ 0.83
COL25A1Q9BXS0 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.23■□□□□ 0.83
COL25A1Q9BXS0 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL25A1Q9BXS0 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 UPF3AP3-201ENST00000420996 769 ntBASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 FAM8A3P-201ENST00000427218 844 ntBASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.21■□□□□ 0.83
COL25A1Q9BXS0 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL25A1Q9BXS0 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.2■□□□□ 0.82
COL25A1Q9BXS0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL25A1Q9BXS0 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL25A1Q9BXS0 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL25A1Q9BXS0 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL25A1Q9BXS0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.2■□□□□ 0.82
COL25A1Q9BXS0 CHCHD2P8-201ENST00000429873 447 ntBASIC20.2■□□□□ 0.82
COL25A1Q9BXS0 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.2■□□□□ 0.82
COL25A1Q9BXS0 LINC00265-3P-201ENST00000447588 903 ntBASIC20.2■□□□□ 0.82
COL25A1Q9BXS0 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms