Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL12A1Q99715 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.4■□□□□ 0.38
COL12A1Q99715 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL12A1Q99715 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL12A1Q99715 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
COL12A1Q99715 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL12A1Q99715 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL12A1Q99715 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
COL12A1Q99715 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL12A1Q99715 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.4■□□□□ 0.38
COL12A1Q99715 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.4■□□□□ 0.38
COL12A1Q99715 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL12A1Q99715 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL12A1Q99715 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.39■□□□□ 0.38
COL12A1Q99715 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.39■□□□□ 0.38
COL12A1Q99715 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL12A1Q99715 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.39■□□□□ 0.38
COL12A1Q99715 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.39■□□□□ 0.37
COL12A1Q99715 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL12A1Q99715 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL12A1Q99715 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
COL12A1Q99715 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.39■□□□□ 0.37
COL12A1Q99715 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
COL12A1Q99715 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
COL12A1Q99715 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
COL12A1Q99715 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL12A1Q99715 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.39■□□□□ 0.37
COL12A1Q99715 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.39■□□□□ 0.37
COL12A1Q99715 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.39■□□□□ 0.37
COL12A1Q99715 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL12A1Q99715 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL12A1Q99715 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
COL12A1Q99715 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL12A1Q99715 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL12A1Q99715 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL12A1Q99715 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.39■□□□□ 0.37
COL12A1Q99715 PRSS44-201ENST00000515154 1146 ntBASIC17.39■□□□□ 0.37
COL12A1Q99715 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.38■□□□□ 0.37
COL12A1Q99715 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL12A1Q99715 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.38■□□□□ 0.37
COL12A1Q99715 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.38■□□□□ 0.37
COL12A1Q99715 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
COL12A1Q99715 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL12A1Q99715 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC17.38■□□□□ 0.37
COL12A1Q99715 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
COL12A1Q99715 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.38■□□□□ 0.37
COL12A1Q99715 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC17.38■□□□□ 0.37
COL12A1Q99715 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.38■□□□□ 0.37
COL12A1Q99715 RNA5SP419-201ENST00000515908 135 ntBASIC17.38■□□□□ 0.37
COL12A1Q99715 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
COL12A1Q99715 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.38■□□□□ 0.37
COL12A1Q99715 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.38■□□□□ 0.37
COL12A1Q99715 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.38■□□□□ 0.37
COL12A1Q99715 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.38■□□□□ 0.37
COL12A1Q99715 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL12A1Q99715 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.37■□□□□ 0.37
COL12A1Q99715 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL12A1Q99715 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL12A1Q99715 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL12A1Q99715 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
COL12A1Q99715 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.37■□□□□ 0.37
COL12A1Q99715 YBX1P10-201ENST00000444752 975 ntBASIC17.37■□□□□ 0.37
COL12A1Q99715 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.37■□□□□ 0.37
COL12A1Q99715 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.37■□□□□ 0.37
COL12A1Q99715 PRELID1P1-202ENST00000567272 903 ntBASIC17.37■□□□□ 0.37
COL12A1Q99715 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.37■□□□□ 0.37
COL12A1Q99715 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL12A1Q99715 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL12A1Q99715 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL12A1Q99715 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.37■□□□□ 0.37
COL12A1Q99715 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL12A1Q99715 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL12A1Q99715 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL12A1Q99715 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.37■□□□□ 0.37
COL12A1Q99715 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.37■□□□□ 0.37
COL12A1Q99715 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.37■□□□□ 0.37
COL12A1Q99715 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.37■□□□□ 0.37
COL12A1Q99715 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.37■□□□□ 0.37
COL12A1Q99715 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL12A1Q99715 AC096733.2-201ENST00000609937 1394 ntBASIC17.37■□□□□ 0.37
COL12A1Q99715 AC127496.7-201ENST00000625110 1798 ntBASIC17.37■□□□□ 0.37
COL12A1Q99715 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.37■□□□□ 0.37
COL12A1Q99715 PTBP1P-201ENST00000554374 1601 ntBASIC17.37■□□□□ 0.37
COL12A1Q99715 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL12A1Q99715 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
COL12A1Q99715 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.36■□□□□ 0.37
COL12A1Q99715 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms