Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 AC142381.4-202ENST00000563973 229 ntBASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 RN7SL471P-201ENST00000580476 299 ntBASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 C1QBPP2-201ENST00000528754 825 ntBASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 MTDHP1-201ENST00000605323 784 ntBASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 BX119927.1-201ENST00000636596 1552 ntBASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD1Q96NR3 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 AL158047.1-201ENST00000445918 881 ntBASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 PRKY-204ENST00000533551 1019 ntBASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 AL121829.2-201ENST00000620908 328 ntBASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 AL162377.1-201ENST00000618844 1793 ntBASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD1Q96NR3 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 AC098590.1-201ENST00000468126 897 ntBASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 AL121906.2-201ENST00000621597 723 ntBASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 AL023875.1-201ENST00000640777 796 ntBASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD1Q96NR3 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms