Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
SMC1BQ8NDV3 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SMC1BQ8NDV3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SMC1BQ8NDV3 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SMC1BQ8NDV3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC23.58■■□□□ 1.36
SMC1BQ8NDV3 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SMC1BQ8NDV3 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC23.58■■□□□ 1.36
SMC1BQ8NDV3 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 AC008040.2-201ENST00000461049 708 ntBASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 AP006587.1-201ENST00000534129 1502 ntBASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SMC1BQ8NDV3 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 AC004951.3-201ENST00000418645 1148 ntBASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 AL353719.1-201ENST00000566847 864 ntBASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC23.56■■□□□ 1.36
SMC1BQ8NDV3 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
SMC1BQ8NDV3 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 CNP-204ENST00000472031 1019 ntTSL 2 BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SMC1BQ8NDV3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 LINC01311-201ENST00000565162 1445 ntBASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms