Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 MIR6084-201ENST00000622012 110 ntBASIC17.65■□□□□ 0.42
CCDC58Q4VC31 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC58Q4VC31 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC58Q4VC31 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.64■□□□□ 0.42
CCDC58Q4VC31 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 AC097381.1-201ENST00000429019 1296 ntBASIC17.64■□□□□ 0.41
CCDC58Q4VC31 SUDS3P1-201ENST00000505831 966 ntBASIC17.64■□□□□ 0.41
CCDC58Q4VC31 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 AC110285.6-201ENST00000617652 491 ntBASIC17.64■□□□□ 0.41
CCDC58Q4VC31 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 Z82202.1-201ENST00000623446 1880 ntBASIC17.64■□□□□ 0.41
CCDC58Q4VC31 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC58Q4VC31 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 AC027612.3-201ENST00000413684 1047 ntBASIC17.63■□□□□ 0.41
CCDC58Q4VC31 CDV3P1-201ENST00000471403 739 ntBASIC17.63■□□□□ 0.41
CCDC58Q4VC31 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC58Q4VC31 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 AC009237.14-201ENST00000609975 1594 ntBASIC17.62■□□□□ 0.41
CCDC58Q4VC31 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CCDC58Q4VC31 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms