Protein–RNA interactions for Protein: P56880

CLDN20, Claudin-20, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN20P56880 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN20P56880 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
CLDN20P56880 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN20P56880 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.13■□□□□ 0.49
CLDN20P56880 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN20P56880 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN20P56880 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.13■□□□□ 0.49
CLDN20P56880 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.12■□□□□ 0.49
CLDN20P56880 AC098818.2-201ENST00000564925 2320 ntBASIC18.12■□□□□ 0.49
CLDN20P56880 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.12■□□□□ 0.49
CLDN20P56880 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.12■□□□□ 0.49
CLDN20P56880 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.12■□□□□ 0.49
CLDN20P56880 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.12■□□□□ 0.49
CLDN20P56880 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.12■□□□□ 0.49
CLDN20P56880 FAM201B-201ENST00000458407 597 ntBASIC18.12■□□□□ 0.49
CLDN20P56880 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.12■□□□□ 0.49
CLDN20P56880 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CLDN20P56880 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.12■□□□□ 0.49
CLDN20P56880 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CLDN20P56880 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 AC092720.2-201ENST00000602388 1665 ntBASIC18.12■□□□□ 0.49
CLDN20P56880 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN20P56880 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.12■□□□□ 0.49
CLDN20P56880 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN20P56880 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN20P56880 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 AP003097.1-201ENST00000530657 1135 ntBASIC18.11■□□□□ 0.49
CLDN20P56880 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.11■□□□□ 0.49
CLDN20P56880 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.11■□□□□ 0.49
CLDN20P56880 SOX15-203ENST00000570788 1093 ntBASIC18.11■□□□□ 0.49
CLDN20P56880 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CLDN20P56880 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.11■□□□□ 0.49
CLDN20P56880 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN20P56880 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLDN20P56880 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN20P56880 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN20P56880 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLDN20P56880 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN20P56880 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CLDN20P56880 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN20P56880 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
CLDN20P56880 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CLDN20P56880 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN20P56880 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.1■□□□□ 0.49
CLDN20P56880 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN20P56880 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN20P56880 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN20P56880 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN20P56880 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CLDN20P56880 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN20P56880 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.1■□□□□ 0.49
CLDN20P56880 AC026366.1-201ENST00000488803 879 ntBASIC18.1■□□□□ 0.49
CLDN20P56880 UNC93B4-201ENST00000505679 747 ntBASIC18.1■□□□□ 0.49
CLDN20P56880 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 AC008403.3-201ENST00000598924 454 ntBASIC18.1■□□□□ 0.49
CLDN20P56880 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN20P56880 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CLDN20P56880 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN20P56880 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN20P56880 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms