Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC128676.1-201ENST00000454392 318 ntBASIC20.39■□□□□ 0.85
NEK3P51956 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NEK3P51956 SOX15-203ENST00000570788 1093 ntBASIC20.39■□□□□ 0.85
NEK3P51956 AC008687.6-201ENST00000596318 630 ntBASIC20.39■□□□□ 0.85
NEK3P51956 AC008403.3-201ENST00000598924 454 ntBASIC20.39■□□□□ 0.85
NEK3P51956 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.39■□□□□ 0.85
NEK3P51956 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
NEK3P51956 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.39■□□□□ 0.85
NEK3P51956 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NEK3P51956 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NEK3P51956 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.38■□□□□ 0.85
NEK3P51956 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 AC125437.2-201ENST00000625180 2167 ntBASIC20.38■□□□□ 0.85
NEK3P51956 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
NEK3P51956 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.38■□□□□ 0.85
NEK3P51956 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.38■□□□□ 0.85
NEK3P51956 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.38■□□□□ 0.85
NEK3P51956 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.38■□□□□ 0.85
NEK3P51956 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
NEK3P51956 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
NEK3P51956 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NEK3P51956 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
NEK3P51956 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.37■□□□□ 0.85
NEK3P51956 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 KRT8P36-201ENST00000489121 1440 ntBASIC20.37■□□□□ 0.85
NEK3P51956 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
NEK3P51956 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
NEK3P51956 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.37■□□□□ 0.85
NEK3P51956 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.37■□□□□ 0.85
NEK3P51956 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.37■□□□□ 0.85
NEK3P51956 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
NEK3P51956 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.37■□□□□ 0.85
NEK3P51956 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.37■□□□□ 0.85
NEK3P51956 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.37■□□□□ 0.85
NEK3P51956 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
NEK3P51956 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.37■□□□□ 0.85
NEK3P51956 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NEK3P51956 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.37■□□□□ 0.85
NEK3P51956 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
NEK3P51956 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NEK3P51956 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.36■□□□□ 0.85
NEK3P51956 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NEK3P51956 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.36■□□□□ 0.85
NEK3P51956 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NEK3P51956 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NEK3P51956 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.36■□□□□ 0.85
NEK3P51956 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NEK3P51956 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.36■□□□□ 0.85
NEK3P51956 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NEK3P51956 AC073648.6-201ENST00000641589 218 ntBASIC20.36■□□□□ 0.85
NEK3P51956 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
NEK3P51956 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
NEK3P51956 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NEK3P51956 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NEK3P51956 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
NEK3P51956 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
NEK3P51956 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.35■□□□□ 0.85
NEK3P51956 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms