Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
COL5A1P20908 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A1P20908 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.11■□□□□ 0.65
COL5A1P20908 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.11■□□□□ 0.65
COL5A1P20908 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A1P20908 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.11■□□□□ 0.65
COL5A1P20908 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A1P20908 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A1P20908 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
COL5A1P20908 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.11■□□□□ 0.65
COL5A1P20908 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A1P20908 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A1P20908 HMGA1P5-201ENST00000412453 271 ntBASIC19.11■□□□□ 0.65
COL5A1P20908 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A1P20908 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
COL5A1P20908 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.11■□□□□ 0.65
COL5A1P20908 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A1P20908 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
COL5A1P20908 AC116351.2-201ENST00000606540 1585 ntBASIC19.1■□□□□ 0.65
COL5A1P20908 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A1P20908 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A1P20908 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
COL5A1P20908 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A1P20908 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.1■□□□□ 0.65
COL5A1P20908 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.1■□□□□ 0.65
COL5A1P20908 ATP5G1P1-201ENST00000448724 379 ntBASIC19.1■□□□□ 0.65
COL5A1P20908 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.1■□□□□ 0.65
COL5A1P20908 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A1P20908 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.1■□□□□ 0.65
COL5A1P20908 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
COL5A1P20908 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A1P20908 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
COL5A1P20908 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
COL5A1P20908 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A1P20908 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A1P20908 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.1■□□□□ 0.65
COL5A1P20908 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A1P20908 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.1■□□□□ 0.65
COL5A1P20908 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A1P20908 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A1P20908 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A1P20908 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A1P20908 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A1P20908 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A1P20908 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A1P20908 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.09■□□□□ 0.65
COL5A1P20908 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.09■□□□□ 0.65
COL5A1P20908 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COL5A1P20908 AC096733.2-201ENST00000609937 1394 ntBASIC19.09■□□□□ 0.65
COL5A1P20908 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A1P20908 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.09■□□□□ 0.65
COL5A1P20908 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL5A1P20908 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL5A1P20908 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.65
COL5A1P20908 TFP1-202ENST00000475455 1573 ntBASIC19.08■□□□□ 0.65
COL5A1P20908 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.08■□□□□ 0.65
COL5A1P20908 AC006128.1-201ENST00000624704 1661 ntBASIC19.08■□□□□ 0.65
COL5A1P20908 FAM8A6P-201ENST00000407496 1135 ntBASIC19.08■□□□□ 0.64
COL5A1P20908 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.08■□□□□ 0.64
COL5A1P20908 AC007375.3-201ENST00000600936 2314 ntBASIC19.08■□□□□ 0.64
COL5A1P20908 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A1P20908 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
COL5A1P20908 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
COL5A1P20908 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
COL5A1P20908 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.08■□□□□ 0.64
COL5A1P20908 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
COL5A1P20908 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
COL5A1P20908 RCC2P6-201ENST00000526625 1557 ntBASIC19.08■□□□□ 0.64
COL5A1P20908 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A1P20908 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A1P20908 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL5A1P20908 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.07■□□□□ 0.64
COL5A1P20908 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.07■□□□□ 0.64
COL5A1P20908 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
COL5A1P20908 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.07■□□□□ 0.64
COL5A1P20908 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A1P20908 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.07■□□□□ 0.64
COL5A1P20908 AC131212.4-201ENST00000623606 975 ntBASIC19.07■□□□□ 0.64
COL5A1P20908 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A1P20908 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A1P20908 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A1P20908 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.07■□□□□ 0.64
COL5A1P20908 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.07■□□□□ 0.64
COL5A1P20908 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A1P20908 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A1P20908 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A1P20908 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.07■□□□□ 0.64
COL5A1P20908 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.07■□□□□ 0.64
COL5A1P20908 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL5A1P20908 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 AC121338.2-201ENST00000622535 1744 ntBASIC19.06■□□□□ 0.64
COL5A1P20908 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.06■□□□□ 0.64
COL5A1P20908 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.06■□□□□ 0.64
COL5A1P20908 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.06■□□□□ 0.64
COL5A1P20908 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
COL5A1P20908 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms