Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLPTM1O96005 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLPTM1O96005 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLPTM1O96005 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLPTM1O96005 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CLPTM1O96005 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CLPTM1O96005 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLPTM1O96005 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLPTM1O96005 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLPTM1O96005 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLPTM1O96005 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLPTM1O96005 LINC01465-201ENST00000408887 1940 ntBASIC18.63■□□□□ 0.57
CLPTM1O96005 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CLPTM1O96005 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLPTM1O96005 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLPTM1O96005 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLPTM1O96005 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.63■□□□□ 0.57
CLPTM1O96005 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.63■□□□□ 0.57
CLPTM1O96005 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CLPTM1O96005 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLPTM1O96005 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLPTM1O96005 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLPTM1O96005 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLPTM1O96005 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CLPTM1O96005 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CLPTM1O96005 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.62■□□□□ 0.57
CLPTM1O96005 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.62■□□□□ 0.57
CLPTM1O96005 AC012414.1-201ENST00000556676 535 ntBASIC18.62■□□□□ 0.57
CLPTM1O96005 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CLPTM1O96005 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.62■□□□□ 0.57
CLPTM1O96005 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CLPTM1O96005 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.62■□□□□ 0.57
CLPTM1O96005 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CLPTM1O96005 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLPTM1O96005 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.61■□□□□ 0.57
CLPTM1O96005 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.61■□□□□ 0.57
CLPTM1O96005 AC011484.1-201ENST00000377652 1995 ntBASIC18.61■□□□□ 0.57
CLPTM1O96005 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CLPTM1O96005 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.61■□□□□ 0.57
CLPTM1O96005 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.61■□□□□ 0.57
CLPTM1O96005 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.61■□□□□ 0.57
CLPTM1O96005 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.61■□□□□ 0.57
CLPTM1O96005 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.61■□□□□ 0.57
CLPTM1O96005 AL358852.1-201ENST00000623174 1268 ntBASIC18.61■□□□□ 0.57
CLPTM1O96005 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.61■□□□□ 0.57
CLPTM1O96005 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CLPTM1O96005 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLPTM1O96005 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.61■□□□□ 0.57
CLPTM1O96005 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CLPTM1O96005 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.6■□□□□ 0.57
CLPTM1O96005 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CLPTM1O96005 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.6■□□□□ 0.57
CLPTM1O96005 AC104581.1-202ENST00000635932 2618 ntBASIC18.6■□□□□ 0.57
CLPTM1O96005 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.6■□□□□ 0.57
CLPTM1O96005 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CLPTM1O96005 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.6■□□□□ 0.57
CLPTM1O96005 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.6■□□□□ 0.57
CLPTM1O96005 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.6■□□□□ 0.57
CLPTM1O96005 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.6■□□□□ 0.57
CLPTM1O96005 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLPTM1O96005 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.6■□□□□ 0.57
CLPTM1O96005 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.6■□□□□ 0.57
CLPTM1O96005 NOC2LP1-202ENST00000452600 2235 ntBASIC18.59■□□□□ 0.57
CLPTM1O96005 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms