Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.22■□□□□ 0.99
FOXN3O00409 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.22■□□□□ 0.99
FOXN3O00409 AC005829.2-201ENST00000571422 1056 ntBASIC21.22■□□□□ 0.99
FOXN3O00409 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.22■□□□□ 0.99
FOXN3O00409 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.22■□□□□ 0.99
FOXN3O00409 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
FOXN3O00409 AL109923.1-201ENST00000618799 583 ntBASIC21.22■□□□□ 0.99
FOXN3O00409 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN3O00409 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN3O00409 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN3O00409 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN3O00409 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN3O00409 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN3O00409 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN3O00409 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
FOXN3O00409 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN3O00409 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.21■□□□□ 0.99
FOXN3O00409 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN3O00409 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.21■□□□□ 0.99
FOXN3O00409 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
FOXN3O00409 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN3O00409 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
FOXN3O00409 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN3O00409 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.21■□□□□ 0.99
FOXN3O00409 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.21■□□□□ 0.99
FOXN3O00409 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.21■□□□□ 0.99
FOXN3O00409 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN3O00409 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.21■□□□□ 0.99
FOXN3O00409 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
FOXN3O00409 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN3O00409 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN3O00409 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
FOXN3O00409 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN3O00409 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN3O00409 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.2■□□□□ 0.98
FOXN3O00409 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.2■□□□□ 0.98
FOXN3O00409 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
FOXN3O00409 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.2■□□□□ 0.98
FOXN3O00409 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.2■□□□□ 0.98
FOXN3O00409 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXN3O00409 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXN3O00409 AC097658.1-201ENST00000475555 843 ntBASIC21.2■□□□□ 0.98
FOXN3O00409 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.2■□□□□ 0.98
FOXN3O00409 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
FOXN3O00409 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.2■□□□□ 0.98
FOXN3O00409 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.2■□□□□ 0.98
FOXN3O00409 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
FOXN3O00409 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXN3O00409 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
FOXN3O00409 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.2■□□□□ 0.98
FOXN3O00409 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXN3O00409 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
FOXN3O00409 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXN3O00409 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXN3O00409 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN3O00409 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
FOXN3O00409 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN3O00409 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.19■□□□□ 0.98
FOXN3O00409 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN3O00409 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN3O00409 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.19■□□□□ 0.98
FOXN3O00409 AC073210.2-201ENST00000430369 194 ntBASIC21.19■□□□□ 0.98
FOXN3O00409 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.19■□□□□ 0.98
FOXN3O00409 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN3O00409 AC006557.6-201ENST00000623071 864 ntBASIC21.19■□□□□ 0.98
FOXN3O00409 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
FOXN3O00409 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN3O00409 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN3O00409 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN3O00409 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.19■□□□□ 0.98
FOXN3O00409 AC018553.1-201ENST00000616682 1458 ntBASIC21.19■□□□□ 0.98
FOXN3O00409 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
FOXN3O00409 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.19■□□□□ 0.98
FOXN3O00409 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN3O00409 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.19■□□□□ 0.98
FOXN3O00409 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN3O00409 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.18■□□□□ 0.98
FOXN3O00409 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN3O00409 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN3O00409 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
FOXN3O00409 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN3O00409 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.18■□□□□ 0.98
FOXN3O00409 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN3O00409 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
FOXN3O00409 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.18■□□□□ 0.98
FOXN3O00409 AL390719.1-204ENST00000412397 1219 ntBASIC21.18■□□□□ 0.98
FOXN3O00409 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
FOXN3O00409 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.18■□□□□ 0.98
FOXN3O00409 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.18■□□□□ 0.98
FOXN3O00409 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.18■□□□□ 0.98
FOXN3O00409 AC104771.1-201ENST00000603335 964 ntBASIC21.18■□□□□ 0.98
FOXN3O00409 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN3O00409 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN3O00409 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN3O00409 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN3O00409 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.18■□□□□ 0.98
FOXN3O00409 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.18■□□□□ 0.98
FOXN3O00409 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.18■□□□□ 0.98
FOXN3O00409 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
FOXN3O00409 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms