Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SMKR1H3BMG3 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SMKR1H3BMG3 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC14.46□□□□□ -0.1
SMKR1H3BMG3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SMKR1H3BMG3 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
SMKR1H3BMG3 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.46□□□□□ -0.1
SMKR1H3BMG3 CD37-204ENST00000535669 1674 ntTSL 2 BASIC14.46□□□□□ -0.1
SMKR1H3BMG3 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 AC104581.1-202ENST00000635932 2618 ntBASIC14.45□□□□□ -0.1
SMKR1H3BMG3 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 LHPP-203ENST00000392757 840 ntTSL 3 BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 KRT8P36-201ENST00000489121 1440 ntBASIC14.45□□□□□ -0.1
SMKR1H3BMG3 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 MIR4767-201ENST00000582827 78 ntBASIC14.45□□□□□ -0.1
SMKR1H3BMG3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 AC233992.3-201ENST00000607491 485 ntBASIC14.45□□□□□ -0.1
SMKR1H3BMG3 AL138781.2-201ENST00000617896 1843 ntBASIC14.45□□□□□ -0.1
SMKR1H3BMG3 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SMKR1H3BMG3 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 POU5F1P4-201ENST00000413175 1085 ntBASIC14.44□□□□□ -0.1
SMKR1H3BMG3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SMKR1H3BMG3 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 LTB4R2-202ENST00000528054 3092 ntBASIC14.43□□□□□ -0.1
SMKR1H3BMG3 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms