Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM49D1C9J1S8 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM49D1C9J1S8 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 AL162412.1-201ENST00000567129 965 ntBASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM49D1C9J1S8 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 ZNRF2P3-201ENST00000424200 374 ntBASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 KRT8P20-201ENST00000423953 1409 ntBASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 AP001271.2-201ENST00000624018 1556 ntBASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM49D1C9J1S8 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 AC007322.4-201ENST00000509611 723 ntBASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 AC013268.1-206ENST00000638368 961 ntBASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 AC112229.1-201ENST00000639295 961 ntBASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM49D1C9J1S8 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 AIRN-201ENST00000601203 4374 ntBASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 MCRIP2P1-201ENST00000394346 511 ntBASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 AC093503.3-201ENST00000624917 2352 ntBASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM49D1C9J1S8 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM49D1C9J1S8 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms