Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PTBP1P-201ENST00000554374 1601 ntBASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 MIPEPP3-201ENST00000412105 444 ntBASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 ISCU-212ENST00000547005 795 ntTSL 3 BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 AC133552.2-202ENST00000575694 574 ntBASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC26.68■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC26.67■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC26.66■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 LSM12P1-201ENST00000411836 588 ntBASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PPP1R14BP2-201ENST00000426284 444 ntBASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PRKY-204ENST00000533551 1019 ntBASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 MMAB-206ENST00000540016 945 ntTSL 3 BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC26.65■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC26.64■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC26.64■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC26.64■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC26.64■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC26.64■■□□□ 1.85
SENP3-EIF4A1A0A087X0R7 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms