Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 TREX1-205ENST00000625293 1783 ntBASIC16.03■□□□□ 0.16
FOXA2Q9Y261 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 PHB2-213ENST00000546111 858 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA2Q9Y261 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 AC009237.14-201ENST00000609975 1594 ntBASIC16.02■□□□□ 0.16
FOXA2Q9Y261 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.02■□□□□ 0.16
FOXA2Q9Y261 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 CYP2T3P-201ENST00000601990 817 ntBASIC16.02■□□□□ 0.16
FOXA2Q9Y261 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
FOXA2Q9Y261 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
FOXA2Q9Y261 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXA2Q9Y261 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC16.02■□□□□ 0.15
FOXA2Q9Y261 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXA2Q9Y261 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC16.02■□□□□ 0.15
FOXA2Q9Y261 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXA2Q9Y261 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXA2Q9Y261 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
FOXA2Q9Y261 AC018445.3-201ENST00000624177 1945 ntBASIC16.02■□□□□ 0.15
FOXA2Q9Y261 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 KRT18P68-201ENST00000392293 1000 ntBASIC16.01■□□□□ 0.15
FOXA2Q9Y261 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 AL589743.5-201ENST00000616611 1050 ntBASIC16.01■□□□□ 0.15
FOXA2Q9Y261 AL109923.1-201ENST00000618799 583 ntBASIC16.01■□□□□ 0.15
FOXA2Q9Y261 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 PTBP1P-201ENST00000554374 1601 ntBASIC16.01■□□□□ 0.15
FOXA2Q9Y261 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA2Q9Y261 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
FOXA2Q9Y261 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
FOXA2Q9Y261 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA2Q9Y261 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
FOXA2Q9Y261 LSM12P1-201ENST00000411836 588 ntBASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms