Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 AC018553.1-201ENST00000616682 1458 ntBASIC18.83■□□□□ 0.6
SCN3AQ9NY46 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.83■□□□□ 0.6
SCN3AQ9NY46 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SCN3AQ9NY46 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 PHGDH-210ENST00000641115 1638 ntBASIC18.82■□□□□ 0.6
SCN3AQ9NY46 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SCN3AQ9NY46 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 AC128676.1-201ENST00000454392 318 ntBASIC18.81■□□□□ 0.6
SCN3AQ9NY46 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 FAM197Y4-202ENST00000622692 608 ntBASIC18.81■□□□□ 0.6
SCN3AQ9NY46 AC073648.6-201ENST00000641589 218 ntBASIC18.81■□□□□ 0.6
SCN3AQ9NY46 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 AL158047.1-201ENST00000445918 881 ntBASIC18.81■□□□□ 0.6
SCN3AQ9NY46 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SCN3AQ9NY46 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 TMEM191A-211ENST00000637163 1067 ntBASIC18.8■□□□□ 0.6
SCN3AQ9NY46 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.8■□□□□ 0.6
SCN3AQ9NY46 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SCN3AQ9NY46 UNC93B4-201ENST00000505679 747 ntBASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms