Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 AL158211.5-201ENST00000623583 2518 ntBASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 AC008403.3-201ENST00000598924 454 ntBASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
BLOC1S4Q9NUP1 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 UNC93B4-201ENST00000505679 747 ntBASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 KRT18P6-201ENST00000555540 1265 ntBASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 AC120498.8-201ENST00000614275 531 ntBASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 TREX1-205ENST00000625293 1783 ntBASIC22.1■■□□□ 1.13
BLOC1S4Q9NUP1 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 TFP1-202ENST00000475455 1573 ntBASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
BLOC1S4Q9NUP1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 GAS7-202ENST00000396115 929 ntTSL 5 BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 RNA5SP413-201ENST00000516373 109 ntBASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 AC008687.6-201ENST00000596318 630 ntBASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
BLOC1S4Q9NUP1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
BLOC1S4Q9NUP1 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
BLOC1S4Q9NUP1 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC22.08■■□□□ 1.12
BLOC1S4Q9NUP1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
BLOC1S4Q9NUP1 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC22.07■■□□□ 1.12
BLOC1S4Q9NUP1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
BLOC1S4Q9NUP1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
BLOC1S4Q9NUP1 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
BLOC1S4Q9NUP1 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC22.07■■□□□ 1.12
BLOC1S4Q9NUP1 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
BLOC1S4Q9NUP1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
BLOC1S4Q9NUP1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC22.07■■□□□ 1.12
BLOC1S4Q9NUP1 DENND3-207ENST00000518347 850 ntTSL 2 BASIC22.07■■□□□ 1.12
BLOC1S4Q9NUP1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC22.07■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms