Protein–RNA interactions for Protein: Q9BQW3

EBF4, Transcription factor COE4, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF4Q9BQW3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
EBF4Q9BQW3 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
EBF4Q9BQW3 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
EBF4Q9BQW3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 SUDS3P1-201ENST00000505831 966 ntBASIC19.33■□□□□ 0.68
EBF4Q9BQW3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 KRT18P20-201ENST00000548986 1279 ntBASIC19.33■□□□□ 0.68
EBF4Q9BQW3 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
EBF4Q9BQW3 AC008406.3-201ENST00000620001 1374 ntBASIC19.32■□□□□ 0.68
EBF4Q9BQW3 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.32■□□□□ 0.68
EBF4Q9BQW3 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 AL138781.2-201ENST00000617896 1843 ntBASIC19.31■□□□□ 0.68
EBF4Q9BQW3 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
EBF4Q9BQW3 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 AC087633.2-202ENST00000565166 1439 ntBASIC19.3■□□□□ 0.68
EBF4Q9BQW3 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
EBF4Q9BQW3 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 AC019069.1-201ENST00000610008 1333 ntBASIC19.29■□□□□ 0.68
EBF4Q9BQW3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 CDV3P1-201ENST00000471403 739 ntBASIC19.29■□□□□ 0.68
EBF4Q9BQW3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.29■□□□□ 0.68
EBF4Q9BQW3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms