Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 MIR718-201ENST00000390190 70 ntBASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 AL023875.1-201ENST00000640777 796 ntBASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 AC239809.2-201ENST00000415381 517 ntBASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 AC023632.3-201ENST00000521633 145 ntBASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 MTDHP1-201ENST00000605323 784 ntBASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLIP3Q96DZ5 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CLIP3Q96DZ5 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.08■□□□□ 0.65
CLIP3Q96DZ5 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLIP3Q96DZ5 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CLIP3Q96DZ5 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLIP3Q96DZ5 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLIP3Q96DZ5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLIP3Q96DZ5 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLIP3Q96DZ5 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.08■□□□□ 0.65
CLIP3Q96DZ5 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.08■□□□□ 0.65
CLIP3Q96DZ5 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLIP3Q96DZ5 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLIP3Q96DZ5 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.08■□□□□ 0.64
CLIP3Q96DZ5 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
CLIP3Q96DZ5 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
CLIP3Q96DZ5 PRKY-204ENST00000533551 1019 ntBASIC19.08■□□□□ 0.64
CLIP3Q96DZ5 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
CLIP3Q96DZ5 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.08■□□□□ 0.64
CLIP3Q96DZ5 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
CLIP3Q96DZ5 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 FP700111.2-201ENST00000619190 1892 ntBASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 AL596275.1-201ENST00000423464 877 ntBASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 AC006128.1-201ENST00000624704 1661 ntBASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CLIP3Q96DZ5 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 AC138932.1-201ENST00000534164 6830 ntBASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms