Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.533e-6■■■■□ 23
UPF1Q92900 MIGA2-210ENST00000483458 2532 ntTSL 218.23■□□□□ 0.516e-7■■■■□ 23
UPF1Q92900 DDX23-207ENST00000550834 869 ntTSL 518.21■□□□□ 0.513e-6■■■■□ 23
UPF1Q92900 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.417e-9■■■■□ 23
UPF1Q92900 FAM160B2-203ENST00000450006 2846 ntTSL 1 (best)17.35■□□□□ 0.371e-6■■■■□ 23
UPF1Q92900 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC16.58■□□□□ 0.248e-8■■■■□ 23
UPF1Q92900 NACA-213ENST00000549855 711 ntTSL 516.47■□□□□ 0.231e-6■■■■□ 23
UPF1Q92900 TMEM110-204ENST00000477591 488 ntTSL 1 (best)16.42■□□□□ 0.223e-6■■■■□ 23
UPF1Q92900 FAM160B2-210ENST00000496599 2344 ntTSL 216.17■□□□□ 0.181e-6■■■■□ 23
UPF1Q92900 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -08e-8■■■■□ 23
UPF1Q92900 RBM3-203ENST00000376759 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.091e-11■■■■□ 23
UPF1Q92900 MIGA2-203ENST00000439290 4345 ntTSL 213.06□□□□□ -0.326e-7■■■■□ 23
UPF1Q92900 PPP1R11-203ENST00000376765 1536 ntTSL 3 BASIC12.9□□□□□ -0.348e-8■■■■□ 23
UPF1Q92900 MIGA2-204ENST00000445183 3598 ntTSL 212.71□□□□□ -0.376e-7■■■■□ 23
UPF1Q92900 FAM160B2-201ENST00000289921 4245 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.381e-6■■■■□ 23
UPF1Q92900 MIGA2-201ENST00000358369 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.456e-7■■■■□ 23
UPF1Q92900 PPP1R11-202ENST00000376763 1464 ntTSL 3 BASIC12.18□□□□□ -0.468e-8■■■■□ 23
UPF1Q92900 SMCR8-201ENST00000406438 8279 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.53e-6■■■■□ 23
UPF1Q92900 HSPA9-201ENST00000297185 3321 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.623e-6■■■■□ 23
UPF1Q92900 SLC39A9-202ENST00000336643 3560 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.744e-9■■■■□ 23
UPF1Q92900 YME1L1-209ENST00000613434 4127 ntTSL 2 BASIC10.23□□□□□ -0.772e-13■■■■□ 23
UPF1Q92900 DDX23-201ENST00000308025 3248 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.833e-6■■■■□ 23
UPF1Q92900 YME1L1-203ENST00000376016 3856 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.892e-13■■■■□ 23
UPF1Q92900 SLC39A9-211ENST00000628474 3701 ntTSL 59.42□□□□□ -0.94e-9■■■■□ 23
UPF1Q92900 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC9.31□□□□□ -0.928e-8■■■■□ 23
UPF1Q92900 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC9.14□□□□□ -0.958e-8■■■■□ 23
UPF1Q92900 ZDHHC5-207ENST00000529480 3546 ntTSL 1 (best)8.85□□□□□ -0.995e-12■■■■□ 23
UPF1Q92900 VAMP3-201ENST00000054666 2205 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -13e-6■■■■□ 23
UPF1Q92900 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.013e-6■■■■□ 23
UPF1Q92900 YME1L1-201ENST00000326799 3994 ntTSL 1 (best) BASIC8.29□□□□□ -1.082e-13■■■■□ 23
UPF1Q92900 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.149e-7■■■■□ 23
UPF1Q92900 HSPA9-202ENST00000501917 275 ntTSL 36.85□□□□□ -1.313e-6■■■■□ 23
UPF1Q92900 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.55□□□□□ -1.363e-6■■■■□ 23
UPF1Q92900 MTAP-213ENST00000616982 2350 nt6.05□□□□□ -1.443e-6■■■■□ 23
UPF1Q92900 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.092e-9■■■■□ 23
UPF1Q92900 KIAA0319L-202ENST00000373266 2377 ntTSL 5 BASIC15.21■□□□□ 0.039e-9■■■■□ 23
UPF1Q92900 SERPIND1-202ENST00000406799 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.374e-10■■■■□ 23
UPF1Q92900 POLR2D-203ENST00000409955 1758 ntTSL 2 BASIC10.98□□□□□ -0.651e-13■■■■□ 23
UPF1Q92900 NARFL-208ENST00000564285 1350 ntTSL 222.79■■□□□ 1.245e-7■■■■□ 23
UPF1Q92900 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.891e-6■■■■□ 23
UPF1Q92900 DNAL4-204ENST00000486019 842 ntTSL 223.1■■□□□ 1.291e-6■■■■□ 23
UPF1Q92900 C1orf159-210ENST00000464905 650 ntTSL 322.4■■□□□ 1.183e-6■■■■□ 22.9
UPF1Q92900 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.073e-6■■■■□ 22.9
UPF1Q92900 C1orf159-212ENST00000467751 2099 ntTSL 220.71■□□□□ 0.913e-6■■■■□ 22.9
UPF1Q92900 C1orf159-203ENST00000379325 2010 ntTSL 218.71■□□□□ 0.593e-6■■■■□ 22.9
UPF1Q92900 C1orf159-211ENST00000465822 1933 ntTSL 218.24■□□□□ 0.513e-6■■■■□ 22.9
UPF1Q92900 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.513e-6■■■■□ 22.9
UPF1Q92900 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.373e-6■■■■□ 22.9
UPF1Q92900 C1orf159-219ENST00000487177 3315 ntTSL 215.86■□□□□ 0.133e-6■■■■□ 22.9
UPF1Q92900 C1orf159-216ENST00000477196 3214 ntTSL 213.26□□□□□ -0.293e-6■■■■□ 22.9
UPF1Q92900 MFSD9-205ENST00000437075 2440 ntTSL 523.2■■□□□ 1.32e-17■■■■□ 22.9
UPF1Q92900 MFSD9-206ENST00000438943 2990 ntTSL 518.04■□□□□ 0.482e-17■■■■□ 22.9
UPF1Q92900 MFSD9-201ENST00000258436 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.482e-17■■■■□ 22.9
UPF1Q92900 MFSD9-208ENST00000496253 347 ntTSL 26.06□□□□□ -1.442e-17■■■■□ 22.9
UPF1Q92900 PLLP-204ENST00000569059 665 ntTSL 3 BASIC28.58■■■□□ 2.171e-8■■■■□ 22.9
UPF1Q92900 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.251e-11■■■■□ 22.9
UPF1Q92900 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC28.42■■■□□ 2.141e-11■■■■□ 22.9
UPF1Q92900 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC41.88■■■■■ 4.294e-10■■■■□ 22.9
UPF1Q92900 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC37.98■■■■□ 3.674e-10■■■■□ 22.9
UPF1Q92900 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC36.41■■■■□ 3.424e-10■■■■□ 22.9
UPF1Q92900 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC34.83■■■■□ 3.174e-10■■■■□ 22.9
UPF1Q92900 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC34.22■■■■□ 3.074e-10■■■■□ 22.9
UPF1Q92900 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC30.21■■■□□ 2.434e-10■■■■□ 22.9
UPF1Q92900 CAPNS1-209ENST00000590049 592 ntAPPRIS ALT2 TSL 519.93■□□□□ 0.784e-10■■■■□ 22.9
UPF1Q92900 CAPNS1-210ENST00000590211 403 ntTSL 57.41□□□□□ -1.224e-10■■■■□ 22.9
UPF1Q92900 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.53■■□□□ 1.362e-8■■■■□ 22.9
UPF1Q92900 TPM4-207ENST00000588032 712 ntTSL 313.92□□□□□ -0.182e-8■■■■□ 22.9
UPF1Q92900 TPM4-213ENST00000591226 2672 nt12.5□□□□□ -0.412e-8■■■■□ 22.9
UPF1Q92900 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC22.97■■□□□ 1.271e-11■■■■□ 22.9
UPF1Q92900 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.47e-8■■■■□ 22.9
UPF1Q92900 XPO5-207ENST00000455854 3629 ntTSL 28.74□□□□□ -1.017e-8■■■■□ 22.9
UPF1Q92900 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.955e-10■■■■□ 22.9
UPF1Q92900 CADM1-207ENST00000537140 1646 ntTSL 1 (best)27.33■■□□□ 1.972e-6■■■■□ 22.9
UPF1Q92900 CADM1-219ENST00000545960 630 ntTSL 522.69■■□□□ 1.222e-6■■■■□ 22.9
UPF1Q92900 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC19.88■□□□□ 0.772e-6■■■■□ 22.9
UPF1Q92900 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC12.66□□□□□ -0.382e-6■■■■□ 22.9
UPF1Q92900 CADM1-206ENST00000537058 3550 ntTSL 1 (best) BASIC11.93□□□□□ -0.52e-6■■■■□ 22.9
UPF1Q92900 CADM1-212ENST00000542447 4223 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.572e-6■■■■□ 22.9
UPF1Q92900 CADM1-203ENST00000452722 8588 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.92e-6■■■■□ 22.9
UPF1Q92900 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.99e-9■■■■□ 22.9
UPF1Q92900 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.319e-9■■■■□ 22.9
UPF1Q92900 NEU4-211ENST00000435855 2281 ntTSL 222.83■■□□□ 1.259e-9■■■■□ 22.9
UPF1Q92900 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC22.17■■□□□ 1.149e-9■■■■□ 22.9
UPF1Q92900 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.9■■□□□ 1.19e-9■■■■□ 22.9
UPF1Q92900 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 19e-9■■■■□ 22.9
UPF1Q92900 NEU4-217ENST00000618597 3013 ntTSL 220.24■□□□□ 0.839e-9■■■■□ 22.9
UPF1Q92900 ATF7-202ENST00000456903 5218 ntAPPRIS P2 TSL 5 BASIC9.46□□□□□ -0.899e-8■■■■□ 22.9
UPF1Q92900 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC8.9□□□□□ -0.985e-8■■■■□ 22.9
UPF1Q92900 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.461e-8■■■■□ 22.9
UPF1Q92900 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.532e-10■■■■□ 22.9
UPF1Q92900 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.135e-7■■■■□ 22.9
UPF1Q92900 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.232e-7■■■■□ 22.8
UPF1Q92900 PEG10-201ENST00000465184 788 ntTSL 38.89□□□□□ -0.998e-15■■■■□ 22.8
UPF1Q92900 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC33.79■■■■□ 32e-6■■■■□ 22.8
UPF1Q92900 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC32.63■■■□□ 2.812e-6■■■■□ 22.8
UPF1Q92900 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.175e-9■■■■□ 22.8
UPF1Q92900 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC9.76□□□□□ -0.855e-9■■■■□ 22.8
UPF1Q92900 GAS2L3-209ENST00000552854 3948 ntTSL 1 (best)4.01□□□□□ -1.771e-6■■■■□ 22.8
UPF1Q92900 WIPF2-201ENST00000323571 7474 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.712e-7■■■■□ 22.8
UPF1Q92900 TNFAIP2-211ENST00000561217 603 ntTSL 316.15■□□□□ 0.186e-7■■■■□ 22.8
Retrieved 100 of 15,879 protein–RNA pairs in 207.6 ms