Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SCUBE3Q8IX30 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.9■□□□□ 0.94
SCUBE3Q8IX30 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.9■□□□□ 0.94
SCUBE3Q8IX30 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.9■□□□□ 0.94
SCUBE3Q8IX30 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.9■□□□□ 0.94
SCUBE3Q8IX30 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.9■□□□□ 0.94
SCUBE3Q8IX30 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SCUBE3Q8IX30 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SCUBE3Q8IX30 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
SCUBE3Q8IX30 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SCUBE3Q8IX30 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SCUBE3Q8IX30 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 POM121L13P-201ENST00000422362 380 ntBASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCUBE3Q8IX30 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 PHGDH-210ENST00000641115 1638 ntBASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 POU5F1P3-201ENST00000428824 1078 ntBASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.87■□□□□ 0.93
SCUBE3Q8IX30 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCUBE3Q8IX30 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCUBE3Q8IX30 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms