Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC12.45□□□□□ -0.42
LINC00643Q86TS7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 EFTUD1P1-204ENST00000560401 1798 ntBASIC12.44□□□□□ -0.42
LINC00643Q86TS7 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 LINC01529-204ENST00000636474 1715 ntBASIC12.44□□□□□ -0.42
LINC00643Q86TS7 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00643Q86TS7 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 H19-201ENST00000411754 1788 ntTSL 5 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 AC005559.1-201ENST00000589661 871 ntBASIC12.43□□□□□ -0.42
LINC00643Q86TS7 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00643Q86TS7 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 CHST11-203ENST00000547956 936 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms