Protein–RNA interactions for Protein: Q6NX49

ZNF544, Zinc finger protein 544, humanhuman

Predictions only

Length 715 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF544Q6NX49 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
ZNF544Q6NX49 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF544Q6NX49 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.18■□□□□ 0.5
ZNF544Q6NX49 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 GPX1P1-201ENST00000388829 606 ntBASIC18.17■□□□□ 0.5
ZNF544Q6NX49 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.17■□□□□ 0.5
ZNF544Q6NX49 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 AL109923.1-201ENST00000618799 583 ntBASIC18.17■□□□□ 0.5
ZNF544Q6NX49 AC010536.3-201ENST00000620306 533 ntBASIC18.17■□□□□ 0.5
ZNF544Q6NX49 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF544Q6NX49 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 POU5F1P4-201ENST00000413175 1085 ntBASIC18.16■□□□□ 0.5
ZNF544Q6NX49 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 AC104771.1-201ENST00000603335 964 ntBASIC18.16■□□□□ 0.5
ZNF544Q6NX49 AC005181.1-201ENST00000604782 1256 ntBASIC18.16■□□□□ 0.5
ZNF544Q6NX49 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
ZNF544Q6NX49 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 AL121832.2-201ENST00000610979 668 ntBASIC18.15■□□□□ 0.5
ZNF544Q6NX49 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 AC011484.1-201ENST00000377652 1995 ntBASIC18.15■□□□□ 0.5
ZNF544Q6NX49 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF544Q6NX49 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.14■□□□□ 0.5
ZNF544Q6NX49 AC027702.1-201ENST00000563810 1770 ntBASIC18.14■□□□□ 0.5
ZNF544Q6NX49 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.14■□□□□ 0.5
ZNF544Q6NX49 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
ZNF544Q6NX49 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 FP700111.2-201ENST00000619190 1892 ntBASIC18.14■□□□□ 0.49
ZNF544Q6NX49 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 AC013268.1-206ENST00000638368 961 ntBASIC18.14■□□□□ 0.49
ZNF544Q6NX49 AC112229.1-201ENST00000639295 961 ntBASIC18.14■□□□□ 0.49
ZNF544Q6NX49 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF544Q6NX49 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms