Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 AC010980.2-201ENST00000587099 1412 ntBASIC19.21■□□□□ 0.67
FOXA1P55317 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.21■□□□□ 0.67
FOXA1P55317 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
FOXA1P55317 BX323043.1-201ENST00000641006 1765 ntBASIC19.21■□□□□ 0.67
FOXA1P55317 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.21■□□□□ 0.67
FOXA1P55317 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXA1P55317 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXA1P55317 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.2■□□□□ 0.66
FOXA1P55317 AC007322.1-201ENST00000426983 750 ntBASIC19.2■□□□□ 0.66
FOXA1P55317 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.2■□□□□ 0.66
FOXA1P55317 AC231657.2-201ENST00000624556 255 ntBASIC19.2■□□□□ 0.66
FOXA1P55317 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
FOXA1P55317 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
FOXA1P55317 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXA1P55317 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXA1P55317 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
FOXA1P55317 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
FOXA1P55317 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA1P55317 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
FOXA1P55317 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.19■□□□□ 0.66
FOXA1P55317 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.19■□□□□ 0.66
FOXA1P55317 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.19■□□□□ 0.66
FOXA1P55317 AC008694.1-202ENST00000636953 945 ntBASIC19.19■□□□□ 0.66
FOXA1P55317 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.19■□□□□ 0.66
FOXA1P55317 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.19■□□□□ 0.66
FOXA1P55317 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.19■□□□□ 0.66
FOXA1P55317 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA1P55317 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
FOXA1P55317 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.18■□□□□ 0.66
FOXA1P55317 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
FOXA1P55317 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.18■□□□□ 0.66
FOXA1P55317 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.18■□□□□ 0.66
FOXA1P55317 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.18■□□□□ 0.66
FOXA1P55317 AP001271.2-201ENST00000624018 1556 ntBASIC19.18■□□□□ 0.66
FOXA1P55317 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.18■□□□□ 0.66
FOXA1P55317 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
FOXA1P55317 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.18■□□□□ 0.66
FOXA1P55317 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA1P55317 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
FOXA1P55317 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.17■□□□□ 0.66
FOXA1P55317 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
FOXA1P55317 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms